Sun, Sun, Sun

Girl SunbathingThere has been a lot of discussion over the summer as to whether we should all be getting a bit more sun to boost cancer-fighting vitamin D levels. That argument coupled with revelations that suntan creams might themselves boost the risk of skin cancer all fly in the face of the contrary view that we should be staying in the shade.

One thing the sun worshippers and those of tan-free skin agree on – getting sun burn is no fun. Now, researchers in England (A country fabled for its sunny climes) are giving volunteers a tan in a bid to find a treatment for sunburn. Anna Nicolaou of the University of Bradford, in the renowned sunspot of the North of England, is examining the biological mechanisms underlying sunburn and why it particularly affects people who don’t get a “good” tan.

The research team hopes to discover whether melanocytes that do not actively produce melanin discharge inflammatory mediators, including pro-inflammatory hormones called prostaglandins, which cause the redness, irritation and swelling of the skin that is observed in sunburn. They also hope to discover why people who tan easily are less likely to develop sunburn, contrasting to pale-skinned people who tend to sunburn easier.

You can find out more via the Bradford U press site.

Meanwhile, at the other end of the beach.

A new light-activated ingredient that mops up damaging iron could help reduce the effects of sunburn, according to research published in the Journal of Investigative Dermatology by UK scientists.

‘When skin is exposed to high doses of sunlight, such as when you are sunbathing, a massive amount of free iron is released in skin cells,’ explains Pourzand, ‘This free iron can act as catalysts for the generation of more harmful free radicals that cause severe cell damage.”

The net effect of mopping up iron released as the skin burns, is to reduce inflammation and pain, which are exacerbated by iron, and to prevent the build up of free radicals, which have been linked to an increased risk of skin cancer.

The researchers, Charareh Pourzand of the University of Bath and James Dowden, now at Nottingham University, are currently testing prototypes of the ingredient in the lab using three-dimensional human skin cultures and anticipate trialling the ingredient with human volunteers in the next two to three years.

Find out more at the Bath U press site

Avoiding spam filter false positives

A lot of email correspondents have been calling up recently to tell me their messages were getting trapped by my spam filter. To be honest, I didn’t even know it was enabled until the first call. It’s been tweaked now so should be okay, but here’s a Top Ten Tips list on how to avoid tripping the spam filters on this and other systems.

Of course, if you’re trying to send me spam, these tips won’t work as they simply cannot be followed if you’re intent on selling me a Rolex watch or getting me rich quick…

Pink Floyd, Sir Isaac Newton, and the missing indigo

First posted 2006-09-06. Updated 2023-01-23

2023 is the 50th anniversary of Pink Floyd’s “Dark Side of the Moon”. You’ll know it instantly from the cover art which shows a prism splitting a ray of light into a rainbow. I grew up with this album, but I must admit I didn’t remember noticing that the rainbow has just six colours. Don’t we normally think of rainbows as having seven – red, orange, yellow, green, blue, indigo, violet?

Interestingly, the six-colour rainbow has been a pride symbol for the LGBTQ+ community for many years. I wondered why that it didn’t have all seven colours either…was it something to do with the suspicion that confirmed bachelor Sir Isaac Newton was maybe gay? Probably not.

Anyway, the Floyd recently updated their socila media logo. The logo features the six-colour rainbow motif, just like the original album artwork. It triggered a load of bigoted comments and ignorant trolling [for which read: free publicity]. The trolls hated that their Pink Floyd had gone all “woke”. Well, aside from the fact that being woke is not a bad thing, the Floyd were woke long before anybody used that word to mean tolerant and accepting. Indeed, the whole album is lyrically about as woke as you can get without propping your eyelids up with matchsticks and wrapping yourself in a rainbow flag, and shouting “right on!”

Pink Floyd 50th Anniversary DSotM logo

But, trolls will be trolls, the endless antiwoke and bigoted bile spat out about the new artwork and the rants from people saying they will never listen to the band again is just incredible.

Better antifa than antiwoke I say. Shine on!

Original Post

Everyone knows the song…

Red and Yellow and Pink and Green, Orange and Purple, and Blue…

Not exactly the best mnemonic for recalling the rainbow, that purple should be “violet” after all, and then there’s the little problem of “pink”!

Much better is my late mother’s VIBGYOR (violet, indigo, blue, green, yellow, orange, and red) as cited in Newton’s famous prismatic experiments. Although some people prefer Richard of York gave battle in vain.

There is a problem. Where is this indigo? Can anyone really distinguish between violet and blue? To my eye, there certainly isn’t a jeans-coloured slice in the spectrum, and as chemist M. Farooq of the University of Karachi in Pakistan suggests this isn’t due to limitations of the prism. An article in the American Journal of Physics (1972, vol 20, p 526), he points out, drew attention to the fact that indigo does not exist in the spectrum some years ago and that instead was nothing more than one of Newton’s “preconceived notions”.

According to that AJP paper, Newton adapted the colours of the artist’s wheel – red, orange, yellow, green, blue, violet, and purple and then added something from his religiosity and his alchemistical bent. The number 7 after all is more heaven than the 6 of hell. Newton gave us the seven colours of the rainbow not because there are seven but because it fit his view of God’s universe better.

The indigo of our mnemonic is actually violet, and what Newton referred to as violet is probably what we call purple. Of course, purple is not present in sunlight but is a colour of mixed pigments on the artist’s wheel. More to the point though, there aren’t just seven colours. The electromagnetic spectrum is just that a spectrum, a continuous spread of hues in the visible and beyond.

All that said, some people do see seven “main colours” when prompted, some people do see a colour between purple/violet and blue in the rainbow.

Meanwhile, here’s the tech bit from the US National Bureau of Standards showing the range of wavelengths of light corresponding to the colour:

400-465 nm violet
465-482 nm blue
482-487 nm greenish blue


597-617 nm reddish orange
617-780 nm red

It’s all very well laying down the colourful law like that, but your idea of “reddish” might be slightly different from mine, in fact I might see orangey-red when you perceive reddish-orange (maybe it’s another example of the ambiguity in art I discussed recently in this blog). Moreover, as John Denker points out, there is a “band” between yellow and green that if the word chartreuse is in your vocabulary you might label it as such. “The question is not whether the band is there, but whether the observer chooses to take notice of it,” he says. “This whole colour-naming issue depends relatively more on cultural and behavioural factors, and depends relatively little on physics,” he adds.

On the same discussion group Thomas O’Haver of the University of Maryland asks, “Is there really in value in having students memorize something like this?”

It still doesn’t help much with the words of that song, though, Red and yellow and pink and green…

American Chemical Society

Not sure which talks to check out at next week’s meeting of the ACS (American Chemical Society), well how about taking your pick from this short list that caught my eye:

  • Prozac could extinguish freshwater mussels
  • California scientists control Argentine ants, naturally
  • Brown seaweed could be the next herbal cure for overweight
  • Pesticides and Parkinson’s disease
  • Biodegradable ‘napkin’ could help quickly detect, identify biohazards
  • Functional foods featured
  • Tiny fuel cells could do away exploding laptop batteries altogether
  • New Orleans “toxic soup” a less serious problem than initially believed
  • Chemistry lays path for stem cell therapy

Ambiguity in art

Where science meets art there are those who see unsubtle reductionism as somehow detracting from aesthetics and there are those who suggest that art seeks objective reality only in a subjective way. The divide between art and science has seemingly never been greater, although some of our most revered historical intellects, perhaps most notably Leonardo da Vinci, would not have understood this arbitrary bifurcation of human endeavour. Indeed, the flip side of the cultural divide posits that art and science are simply two faces of the same coin, endlessly turning and laying the condition of reality bare through the machinations of the human mind.

In this paper, Yevin seeks to provide science with the tools necessary to understand the nature of artistic perception and so quantify our aesthetic sense. He reviews the notion of ambiguity in art and shows how a mathematical model of ambiguous patterns seen in artistic works can help us understand how the human brain functions. Moreover, ambiguity, whether an optical illusion or trompe d’oeil in painting, a pun or joke, or the ambiguity we enjoy in both literature, drama, and even sculpture, he claims, could be intrinsic to the incredible adaptability of the brain. The human brain, after all, is considered to be the most complex system in the universe, its ability to process ambiguous patterns and sensory inputs may have evolved to allow it to function on the cusp of stability and so be amenable to adapting to any given environmental pressure with what we commonly refer to as creative thought.

One of the most famous, or infamous, of ambiguous artistic statements is the smile of Leonardo’s Mona Lisa, which is at once blissful and melancholic. The viewer’s interpretation hinges on mood and preconceptions about the painting. Leonardo was entirely deliberate in painting the model so that cues to her true mood in the mouth and eyes are hidden by the sfumato technique he employed. Consequently, her enigmatic smile has inspired countless arguments in the half-millennium since it was created.

Ambiguity, and in particular multi-stable perception of ambiguous figures, is textbook material for psychology undergraduates. Most people have seen the sketches described by Yevin in this paper and others: the old lady that reveals herself to be a young woman or the two opposing faces that are nothing more than a vase. And, of course, the Mona Lisa. Nevertheless, it is not entirely clear how visual and semantic ambiguity, which are so often connected to the availability, or lack thereof, of information, preclude the brain from visualising a unique interpretation. Recent research hints at the essential function of consciousness as to resolve ambiguities. When it fails in its task we are left with a feeling of discordance that can manifest itself as pleasure or pain, whether the ambiguity is in visual art, a dramatic line, or a joke.

When one looks at images such as the “old-lady, young woman” sketch, one feels an incredible sense of dissonance in that the revelation of old or young never occurs. Indeed, the mind seems to flip endlessly between bistable states, never settling on a single interpretation, and of course, wholly unable to see both states simultaneously. Such bistability is common throughout science and is the cognitive analogue of critical states in the physical sciences. For instance, ice-water has a dual nature. It exists at a critical temperature and pressure and a disturbance in either can push the fluid to freeze solid or melt completely into liquid water. The ambiguous image similarly sits on such a catastrophic cusp, collapsing into one interpretation or the other depending on our mood and preconceptions at any given point in time. Yevin suggests that it should be possible to quantify the non-linear nature of our brain’s response to such stimuli.

Indeed, he describes a formula which superficially resembles a potential function borrowed from physical science, but in terms of psychology is merely hypothesized and represents the brain “flipping” between two states when confronted with ambiguity. The parameters of Yevin’s formula provide a measure of the apparent physical differences between the two states in the ambiguous pattern. The formula can thus be employed in a computer pattern recognition system to define the old lady and the young girl, for instance, and so by analogy suggest ways in which the brain responds.

More sophisticated ambiguity in art is represented by the work of Giuseppe Arcimboldo who specialised in creating representations of human faces from inanimate objects. “The Librarian” for instance, at first glance, is obviously a person with a powdered wig and a heavy cloak. But, another look reveals “him” to be nothing more than a pile of books, albeit arranged in an unconventional way so as to deceive. Fruit, leaves, twigs and other objects from the natural world are also Arcimboldo’s building blocks for creating other ambiguous characters – “gardener or vegetables in a bowl?” he asks us. Surrealist Salvador Dali too offered the world incredible ambiguities in his paintings and sculptures. The Mona Lisa and Jan Vermeer’s Girl with a Pearl Earring, explains Yevin, represent the subtle palette of ambiguity, tugging at deep emotions and precluding “closure”.

Novels and movie plots exploit ambiguities too. Commonplace examples of instability in a story for instance might be the spy operating undercover or a two-timing lover’s secret wooing. At any moment, the agent may be unmasked, which provides for captivating suspense as our brains attempt to handle the ambiguity. Such ambiguity is represented widely in folk tales too, in which a cuckold secretes themselves into another’s life – the wolf in Little Red Riding Hood – or a person is removed from his own domain into the unfamiliar world of another – the Prince and Pauper, for instance. Even the Ugly Duckling and Beauty and the Beast type stories often contain plots in which ambiguity plays a critical role and is sustained until the story’s climax.

Much of poetry also relies on hidden meaning, puns, homonyms and phononyms – all ambiguity. Ambiguity is also present in other art forms from sculpture to music in Cole Porter’s “strange change from major to minor”, which alludes to the ambivalence of certain harmonies, which may resolve with either a happy or a sad tone depending on the composer’s muse.

Yevin suggests one response of a brain confronted with ambiguity is laughter. The universal ha-ha-ha of people laughing is, he claims, a manifestation of the brain switching between two contrary states and recognising the humour in ambiguity. Yevin does not say whether or not chimpanzees who use similar repeating staccato sounds in their communication are also experiencing a feeling of ambiguity, although a chimpanzee’s “laughter” is usually associated with physical contact such as tickling. However, tickling is in itself a highly ambiguous experience – both pleasurable and painful concomitantly.

Consider the ambiguity in this joke and imagine it is funny enough to make you laugh. Sherlock Holmes and Dr Watson have gone camping. They pitch their tent under the stars and go to sleep. Sometime in the middle of the night Holmes wakes Watson up. “Watson,” he orders, “look at the stars and give me your deduction.” Watson replies, “I see millions of stars around any one of which might orbit a planet similar to Earth and therefore deduce we are not alone in the universe.” Holmes retorts: “No, you idiot! Someone has stolen the tent!”

This “joke” contains two different semantic interpretations of being able to see the night sky during a wakeful camping trip. Now, imagine it were a truly funny joke that made the shoulders judder and the ribs ache as the brain flips between the two possible interpretations. It’s easy to see how Yevin’s ha-ha-ha theory might well be valid.

Yevin also explains that ambiguity need not rely on semantics to be funny. Comic impressionists mimic the voice and mannerisms of their victims and the comedy arises partly because we “know” that we are watching the actor and yet we “see” the person they impersonate. Again, the ha-ha-ha effect emerges as our brains flip from seeing the caricature to seeing the impressionist.

If much of humour resides in the bistable nature of a comic impressionist or two incongruous interpretations of a given situation as in Holmes and Watson sharing their (lack of) tent, then why don’t we laugh at the Mona Lisa smile? Yevin suggests that the answer lies in the frequency at which our brains can oscillate between the two states. Recognising the semantics that give rise to the humour of a punchline takes very little brain mass compared with the process of visualising the Mona Lisa smile as blissful or melancholic. The visual cortex is an evolutionarily ancient brain structure and so is relatively slow compared with the much more recent language centres and their lightning responses. In these faster regions, bistable oscillation surely occurs at a higher frequency, which funnily enough coincides with the guttural response we know as laughter.

This perpetually elusive resolution might be the key to the human condition:  the pleasure and pain of romantic love, the parent torn between clinging to a child or letting go, the humour in ambiguity, and ultimately the final bistable state that is life and death? Whatever the answer such a reductionist view does not remove the pleasure of seeing the Mona Lisa smile nor stop us laughing at Holmes and Watson. Rather, it adds to our knowledge, provides new insights into human nature, and helps us appreciate the wonderfully complex system that is the human brain.

This article originally appeared in the journal Complexus back when I was an editor of that publication.

Branching out into optics

Dendrimeric molecules are multiply branched compounds that chemists have investigated keenly for their potential applications in medical diagnostics, molecular recognition, catalysis, and photoactive device engineering. Now Mark Humphrey of the Australian National University in Canberra and colleagues have developed organometallic versions of these compounds that are more stable than others. They investigated alkynylmetal complexes because of their potential to form materials with non-linear optical characteristics. Novel NLO materials will be crucial for the generation of opto-electronic computational and communications devices as well as in new types of sensor protection from laser threats.

Read on…

Crystallising thoughts on bird flu

UK researchers have determined the X-ray structure of a key protein of the avian influenza virus that reveals a peculiarity that might prove the Achilles’ heel of bird flu and allow new potent drugs against the disease that could stave off a flu pandemic.

H5N1 virus is named for the particular haemagglutinin (H) and neuraminidase (N) proteins that are found on the viral coat. Haemagglutinin allows the viral particles to bind to and infect host cells, while neuraminidase helps the virus to escape infected cells and attack new ones. There are 16 H’s and 9 N’s in known variants on the influenza type A virus.

It is the neuraminidases that are the target for drugs such as oseltamivir (Tamiflu) and zanamivir (Relenza). The trouble is, N1 is not the exact target for which they were designed. Rather the design of these drugs was based on neuraminidases N2 and N9 found in other influenza type A strains. H5N1 itself resides in a genetically distinct group. Structural information from this group could be critical to producing drugs that are resistant to emerging resistance in influenza.

Read the full story in my latest news round up at spectroscopynow.com

Nervous analysis

Chemical communication between nerve cells underlies brain functions, such as the control of sensory and motor processing, memory and learning. Monitoring neurotransmitter secretion is crucial to studying and understanding how the brain works. Various research teams have endeavoured to develop techniques for monitoring neurotransmitter release at the single-cell level, according to researchers in The Netherlands only invasive methods such as electrophysiological techniques and fluorescent probe labelling have provided adequate temporal and spatial sensitivity. These limits suffer from being limited to specific analytes.

Now, the researchers have turned to a specialist spectroscopic technique to develop a new approach to monitoring neurotransmitters that is non-invasive and side-steps the issue of analyte limitations.

Read the complete story in SpectroscopyNOW.com

High performance spectroscopy

High performance liquid chromatography (HPLC) is usually the technique of choice for separating and analysing complex mixtures of small molecules in laboratories around the globe. As such, a whole range of specialist materials for particular types of analyte have been developed. French researchers, however, have now developed a novel approach to separation and analysis based on NMR that uses a simple solid support, such as porous silica gels.

Guilhem Pagès, Corinne Delaurent, and Stefano Caldarelli of the University of Provence and Paul Cézanne in Marseille, France, recently developed an alternative for identifying components in a mixture that avoids the complexities of chromatography and relies instead on solid-enhanced diffusion-based NMR.

“The determination of the components of assemblies of small molecules is an extremely common task in chemical labs,” the researchers say. A method that mimics part of the chromatography process can they explain achieve good separation for certain types of common mixture but using only very simple chromatographic materials, which not only simplifies the analytical process but is far less expensive than employing sophisticated materials.

More…

Photochemistry without light

photochemistry without light

Infrared and nuclear magnetic resonance spectroscopy are anything but child’s play, but now US chemists have used these techniques to follow the chemistry of “light sticks” and to develop a light-free version of photochemistry. This contradiction in terms could be exploited in a remote cure process for photopolymers, they say, allowing inaccessible cracks in pipes, joints or containers, to be sealed as well as having other practical applications in coatings, paints, varnishes, adhesives and sealants.

Light sticks hold children’s parties in awe with their eerie yellow-green glow as well as providing emergency lighting without electricity or a naked flame. The chemistry taking place when the stick is “snapped” and the materials mix involves oxalyl chloride and hydrogen peroxide reacting in the presence of a fluorophore, which emits light as the reaction proceeds.

Read the full story in the latest news round up from David Bradley on SpectroscopyNOW.com