A Chilli Gut Feeling

Sufferers of irritable bowel syndrome (IBS) apparently have more protein receptors for the active compounds in chilli peppers, according to a study to be published June 11 in the journal Gut (PDF). The findings might one day lead to new treatments for IBS.

IBS is a painful, often chronic, condition which can cause cramping abdominal pains, bloating, and bowel problems such as constipation or diarrhea. The new work, carried out at Imperial College London, UK, shows that people with IBS have higher than usual levels of nerve fibres expressing the pain receptor TRPV1, responsible for the experience of the burning sensation when one eats chilli peppers. Finding compounds that block this receptor might lead to novel pharmaceuticals for IBS.

Water, Water, Everywhere

Water turbineFresh, clean water is going to be increasingly in short supply. Despite the recent heavy rains across Southern Europe, the building of desalination plants in such regions, and the shipping in of water supplies from elsewhere is likely to increase in coming years, while desertification will maintain its dehydrating crawl and some regions of the developing world will continue to die of thirst in hotter dry season, while squandering the precious harvest of the rainy season.

So, what’s the answer? Solar-powered desalination certainly, or perhaps the extraction of the hydrate component of abundant desert minerals such as gypsum (calcium sulfate dihydrate, 20% water by weight)?

In a forthcoming issue of the International Journal of Global Environmental Issues (2008, 8, 224-232), M. Whisson of Subiaco, in Western Australia, discusses two serious alternatives for providing even the most parched lands with unlimited fresh water. Both approaches are reminiscent of ancient, old world technologies, but could provide a modern solution. Whisson explains the problem:

The world water crisis may be more serious than generally appreciated. One reason for this is that the main response has been to increase storage of rain rather than to increase the amount of fresh water. Another is that fossil groundwater has been widely seen as inexhaustible.

Storage and redistribution of rain water, of course requires processing plants while those suffering debilitating and ultimately fatal arsenic poisoning on the Indian sub-continent are all too familiar with the effects of the desiccation of aquifers.

“There are two, and only two, unlimited sources of water: the sea and the air,” says Whisson. The Earth has 1.26 x 1021 litres of water, of which 98% is seawater. The surface is acted on by solar radiation, turbulence and wind, which liberates water into the atmosphere ensuring that the lower 1 kilometre of the atmosphere (volume of 5 x 107 cubic kilometres contains 1 x 1015 kg of water, which turns over with a half life of a few days.

Harvesting of water from the air on a very small but socially important scale has a long history, as does desalination of seawater but, says Whisson, in the context of current and growing world needs, these approaches will provide nothing but a short delay in the onset of global life-threatening water scarcity. This is especially so, given their small, centralised scaling as industrial units.

Instead, Whisson suggests two fresh water collecting systems and argues that they have no ultimate limitations, either because of the availability of water or because of environmental constraints. The first system is the Water Road, a macro-engineering concept, which produces fresh water from seawater without the energy and processing demands of conventional desalination. It also offers a distributed network system that precludes many of the issues facing an industrial-style desalination plant. This system uses a large surface area to allow a non-fresh water supply to be distilled by solar and wind energy and trapped as fresh clean water.

The distillation would occur during the transfer of seawater inland (essentially given a kickstart by tidal surges) to the area of need, explains Whisson. This seems counter-intuitive, but immediately provides a high surface area, while the slow flow rate through a wide pipeline under a transparent heat-insulating cover means a large surface area of water is exposed to the sun over several days, with wind turbulence on the seawater surface acting like the natural process of transfer of surface water to the air over the open sea. This system of evaporation also avoids the inhibitory effect of water vapour saturation of the evaporating air. The concentrated seawater formed as a byproduct could be used to produce common sea salt at much lower cost and efficiencies than traditional drying pools.

The second system is a Water from Air system that uses a wind turbine to extract moisture from the wind. Whisson points out that at a relative humidity of 60%, a temperature fall from 20 to 5 Celsius would only require 10 grams of water per cubic metre of air. However, once it is recognised that a wind-driven turbine with an aperture of 10 square metres facing into a moderate breeze of 10 kilometres per hour would acquire 100000 cubic metres of air containing 1000 kg water every hour. Even with an efficiency of just 20% that would be a useful system, especially given that thousands of turbines could be installed in dry regions.

The two systems are seen as complementary,” explains Whisson, the Water Road providing water to large arid geographic areas, such as Western Australia, and the Water From Air units providing dispersed multiple water collection from the air wherever it is needed, whether on high industrial buildings, farm buildings, coastal cliff-tops, remote sand hills or small isolated communities.

Whisson, M. (2008). Two proposals for unlimited fresh water. International Journal of Global Environmental Issues, 8(3), 224. DOI: 10.1504/IJGENVI.2008.018637

Lead Astray

Literal gun crimeReminiscences on a serious Stateside gun crime: You would think you wouldn’t find a less controversial topic to write about than the analysis of heavy metals using thermal ionisation mass spectrometry (TIMS). In some ways it must sound like the dullest topic in the world, beyond those who work with MS. However, when the metal in question is lead, and its source is ammunition then I should have been prepared for a flame-war from the US readership over one particular specialist publication for which I wrote on the subject a few years ago. The bottom line is: don’t make flippant remarks connecting guns and ill health unless you want to be shot down in flames.

Anyway, the article in question (Instruments and Applications – Lead astray, from the now defunct Today’s Chemist at Work, can be downloaded here as a PDF) discussed TIMS’ analytical prowess and the serendipitous discovery by Australian researchers that it is not only those looking down the barrel of a gun who can end up with a nasty dose of lead, but perhaps even those holding the shooters themselves. With that article, it seems I hit a rather raw nerve in ending my feature with a rather glib question asking whether this might be a “healthy argument against bearing arms.”

In finishing with this throwaway query I was apparently jeopardising the very US Constitution. At least that’s the impression I got when my Editor began to forward the deluge of letters of complaint. I was accused of ignorance (not the first time), of having a political agenda (never), and even of being a “liberal” (perish the thought). One shooting chemist emailed in all uppercase letters to show his indignation:

“THE LAST SENTANCE SHOW YOU TO BE A LIBERAL WHO THINKS THAT GUNS ARE AN EVIL.”

Iron-ically, or should I say lead-ingly, another correspondent critical of the inaccurate portrayal of guns in fiction came to my rescue: “Keep up the good work, and kudos to David Bradley for a well-written article!” he proclaimed. So everything I wrote wasn’t all bad, after all.

Spelling, grammar, capital errors, and green spidery ink aside, the comments received highlighted an issue on which many readers of the magazine were obviously very passionate. I must confess, nothing I have written before has generated quite so many letters.

Was I naïve to throw scorn, albeit flippantly, on the idea of bearing arms? My Editor and her colleagues were as stunned as I at how many letters the article generated, especially given that the magazine was targeted at industrial chemists and not the general public. However, the 99,967 or so subscribers who didn’t write in obviously didn’t feel that the attitude gap between opposite sides of the Atlantic was quite as wide as the few who did.

Nutraceutical News

Functional peppersI discovered a rather intriguing perspective on the world of wellbeing, health and nutrition in the latest issue of the journal World Review of Science, Technology and Sustainable Development (2008, 5, 104-123). In it, Sundus Tewfik of the Department of Health and Human Sciences at London Metropolitan University and Ihab Tewfik of the University of Westminster, shed light on nutraceuticals, or functional foods as they are sometimes called. You will doubtless have seen mention of functional foods and botanical dietary supplements as they seem to fill the advertising space in Sunday supplements and feature regularly in lifestyle magazines.

Apparently, nutraceuticals promote wellbeing and underpin public health by providing a supposedly natural way to lower raised cholesterol levels, help unblock clogged arteries, ward off otherwise inevitable cancers, and ease the machinations of the over-sensitive gut. All this, without anyone having to resort to pharmaceutical products and double-blind placebo-controlled clinical trials.

It’s the opening paragraphs of the paper that were the most interesting with regard to the state of play when it comes to the gradual public acceptance of the marketing hype surrounding nutraceuticals:

Consider this domestic scene: it is a typical Sunday morning in an English household in the city of Westminster, London. Mrs Jones is preparing breakfast for her family. Like most mothers, she is concerned about her family’s nutritional status and tries to cook healthy meals. This morning it is an English breakfast, but not just an ordinary one.

Personally, I doubt there are many such domestic goddesses around these days, particularly in Westminster, but more to the point, I think many families these days rush breakfast with at best a quick splash of synthetic fruit juice, and some artificially flavoured cereal rather than feasting on the great English breakfast. But, that aside, the researchers then describe the menu:

The wholemeal bread was made out of grains to increase dietary fibre intake and essential micronutrients, thus helping bowl [sic] movement and support the gastrointestinal tract. The omega 3-enriched eggs will enhance the immune system, reduce the risk of cardiovascular diseases (CVD) and blood clotting. The sugar-free orange juice has added vitamins and antioxidant nutrients, believed to reduce the risk of diabetes, CVD and cancer. The extra virgin olive oil she uses to fry the eggs [You shouldn’t use extra virgin to fry, it degrades rapidly at high temperatures, db] has been chosen to help lowering her mother-in-law high cholesterol.

Agreed, wholemeal bread is probably better for bowel movements than bland and bleached white bread, but wholemeal, while functional, is not the breakthrough health product. After all, my grandmother extolled the virtues of roughage to me decades ago.

The mention of omega acids and antioxidants is possibly valid, but there are no wide-scale trials yet to backup some of the wilder claims made in the popular press. Indeed, adding to one’s diet excessive amounts of antioxidants could ultimately compromise one’s immune system. The i immune system, after all, relies on its own oxidants to kill invading pathogens and destroy cancer cells.

Next, the team suggests that the breakfast sausages with “less than 1% fat” will somehow eliminate any risk of CVD posed by saturated fatty acids. Well, 1% might be described as low fat, but I’d prefer the term reduced, but again, I am not sure how functional are reduced-fat sausages.

One of my many pet peeves regards the claims surrounding so-called organic foods. The jury is still well and truly out on whether there are any benefits and as for the lack of pesticides and fertilisers requires some of those used by organic practitioners are already known to be more hazardous. The beans, tomatoes and mushrooms being “organically grown” also does not take into account the fact that just because Mrs Jones in Westminster can afford the luxury of organic this does not mean organic is better for the world. Energy expenditure for organic farming on a large enough scale to feed the world could be significantly greater than in non-organic methods.

Finally, the salt used by hubby was specially manufactured to help minimise his high blood pressure. Well, yes, I’d concede that’s a functional food. But, whether or not a sprinkle of non-sodium salt is going to benefit Mr Jones’ blood pressure is not beyond doubt; alcohol consumed, cigarettes smoked, processed foods eaten, and genes inherited, play a much bigger role. More to the point, given that the sausages will have been made with salt, why not simply not use salt at all, those organic foods are claimed as more flavoursome anyway, so no need to enhance with salt.

The researchers end their introduction with the thought that this Westminster breakfast is not a scene from ‘Balanced-Nutrition’ program on national television, it is the era of medicinal and functional foods and it is happening as we read this paper in many parts of the world. This is not just food this is ‘functional foods’.

Well, I am not so sure, most of what they describe is not functional in the conventional sense, although elsewhere in the paper they list dozens of functional foods and herbal supplements such as ginseng and Gingko biloba. There may certainl dozens, if not hundreds, of food products now on the market that claim some kind of health functionality. But, the whole notion of a supplemented diet that might improve wellbeing has been stacked very high in recent years. There are shelves full of milky probiotic drinks full of microbes that supposedly repopulate your intestine with good bacteria, products with plant steroids to reduce cholesterol, ward off the menopause, and dozens of herbal extracts each one of which is seemingly a cure-all for a wide range of disparate health conditions.

As long ago as 2001, uber-skeptic of the alternative medicine movement, Edzard Ernst of Exeter University, asked whether functional foods, neutraceuticals, and designer foods are simply an innocent fad or a counterproductive marketing ploy? (Eur J Clin Pharmacol 2001, 57, 353-355). He pointed out that so-called functional foods invariably contain less than therapeutic quantities of their active ingredients and may contain higher levels of apparently “unhealthy” ingredients such as saturated fats.

Almost a decade later, there is still a lot of health hype in those lifestyle magazines and supermarket shelves are increasingly stacked with organic produce, with its premium price tag, and healthstores are packed with botanical products from all corners of the globe. Is this food fad just a cynical marketing exercise, not only for food manufacturers, who can charge more by making dubious health claims for their products, but also for the pharmaceutical and health-care product companies who are now, as blockbuster pipelines dry up, providing the ingredients for the functional diets we are all being told we must consider.

I suspect, once the advertising revenues dwindle and the lifestyle magazines become necessarily bored with the functional food fad, that ultimately many will be left on the shelf while the next moneyspinner rings the changes at the checkout.

UPDATE> I’ve been having an interesting correspondence with commentator David Lustig who points out that there are some very rigorous double-blind placebo-controlled trials omega 3 products. These were carried out for the approved prescription drug Omacor, sold by Reliant, which is essentially nothing more than purified, concentrated fish oil. It has a profound effect on lowering triglycerides and is currently one, if not the only effective approved drugs for hypertriglyceridemia. Lustig suspects it will probably sell at least US$500M this year.

It’s an interesting point at the extremes there is a blurred division between the pharma and the nutra. However, this FDA approved product can in no way be categorised as being of the same ilk as probiotic yoghurt, although it is nothing more than concentrated fish oil a lot can happen when something is concentrated. More to the point, it will be almost 100% free of the kinds of contaminants, such as mercury, that might be found in the healthfood store kind of omega 3 fish oil products that are at much, much lower concentration.

Sunshine Monomer and the X-ray Sidestep

Sunny faceA simpler, gentler eye test based on Raman spectroscopy could spot ocular infection and other problems without irritating patients, although they may be required to yawn during the procedure. Whichever way you look at them, whether through the emotional blur of crying or as lachrymal secretions ripe for analysis, tears are complex. Now, researchers in the UK, have taken a close look at this aqueous solution of proteins, metabolites, electrolytes and lipids using Raman spectroscopy and obtained results that would make any ocular enthusiast cry with joy. Read more about this today in a sneak preview of my SpectroscopyNOW column for June 1.

Also in the June 1 issue – Sunshine monomer – Australian researchers have built a model of the skin pigment that protects us from harmful ultraviolet rays, that could help explain how the pigment can absorb and dissipate the energy of 99.9% of solar UV. Meanwhile crystallographers in the USA may have found a way to side-step one of the most frustrating steps in obtaining a molecular structure using X-ray diffraction, the crystallisation process itself. Instead, they’re using lasers to align molecules in the gas phase so that they can get Bragg-like diffraction pattern with pulses of high-energy synchrotron X-rays. The work could open up protein science in an entirely unprecedented way allowing proteins that cannot be crystallised to be studied with atom-by-atom detail. More on that, here.

Sex and Sin and Some Science

Lingerie shoppingPorn star names originally posted in August 2005, this was something of a joke post about how porn star names have become almost the  post-modern equivalent of a person’s astrological star sign, and a whole lot more scientifically valid, if you ask me, with names like Lucky Cocker and Goldie Black common. That’s despite first appearing almost three years ago, this post has had almost 14,000 readers so far in 2008 alone and that figure does not include anyone who read the post on any of the hundreds of sites that syndicate (legit) or scrape (exploitative) Sciencebase content.

Seven deadly sins With this year’s pronouncements from a certain central office in Rome, was it, this post about the so-called seven deadly sins, originally posted in February 2007 has garnered renewed interest from more than 8000 readers in 2008, not counting those who read it purely in the fulltext RSS newsfeed rather than visiting the site. A follow-up post entitled Seven Deadly Sins for Scientists also did very well at the time with a burst of 2000+ readers.

Anandamide cannabinoid This post has had more than 7000 readers this year. I cannot imagine what they’re hoping to find, but given it’s a spoof Beavis and Butthead style script together with a great cartoon about dope, cannabis, weed, skunk, call it what you will, I guess that might have something to do with its popularity.

Viagra sildenafil citrate They do say that almost every pub conversation will eventually boil down to talk of sh*t or sex, well the same goes for blogs, I guess and this post is no exception grabbing the attention of almost 4000 of you so far this year.

Obesity gene A perennial discussion topic on any sci-tech-med-health blog is inevitably going to be the issue of overweight and obesity, especially if scientists have brought up the subject of a genetic excuse, and this post from April 2007, with its Barbie girl photo has caught the eye of about 3500 readers from jan to May 2008

A billion light years from home Finally, another blockbuster this one with 10,000 readers since its ascendance on New Year’s Day 2008 (no, I wasn’t blogging then, it was a post scheduled prior to the break) does rather suggest that Sciencebase readers are not only interested in sex, obesity, pornstar names, sins, and cannabis, but also quite like a bit of astronomy too.

Catching the Travel Bug

Girl SunbathingLong gone are the days of a summer break where the biggest health risks were stepping in donkey droppings on the beach or being sick on a fairground ride. These days, trips abroad provide the traveller with a whole range of diseases, so what’s our defence?

Our first line of defence against many of these diseases is our immune system. Unfortunately the immune system is not perfect and cannot always mount an effective attack against invading viruses, bacteria, and parasites. This is where vaccination often comes into play.

Vaccines were essentially discovered by Edward Jenner in the late 18th century. They are based on the idea that the immune system can be stimulated by components of a pathogen — i.e. the virus or bacterium. Proteins or protein fragments (antigens) produced by pathogens alert white blood cells to their presence, which then engulf the pathogen and destroy it. The cells also start to produce Y-shaped protein molecules (antibodies). The tips of the Y match the antigens produced by invaders like a lock to a key.

The antibodies travel through the blood stream and every time they bump into an antigen that they recognise, they lock on to it. This labels other pathogen particles for attack by yet more white blood cells which see the antibody signal and digest the invaders or infected body cells. The immune system retains the chemical blueprints for making the same antibodies again for the next encounter. This is why if you survive childhood diseases such as chicken pox you are unlikely to catch it again in adulthood, although this example belies the fact that chicken pox apparently lies dormant and can re-emerge later in life as shingles.

Vaccination tricks the immune system into thinking a pathogen is attacking by using dead or a deactivated version of the virus or bacterium. The white blood cells respond, creating antibodies against the antigens but without you having to catch the disease first. The blueprints for the antibodies are stored chemically ready for a real invasion of the disease. You need a different vaccine for each disease you might encounter and if you are travelling in the Tropics or the developing world there are quite a few diseases you need protection against.

Diphtheria

Among the diseases for which a vaccine is available is diphtheria. This highly infectious disease is caused by the bacterium Corynebacterium diphtheriae, which affects the upper respiratory tract. Symptoms include a severe sore throat and fever which is followed by the formation of a lethal sticky coating in the nose and throat. The bacteria also release a toxic molecule into the blood — a chain of 535 amino acids, which penetrates cells and kills them.

In the 19th century, scientists discovered a serum that neutralises the diphtheria toxin. This ‘antitoxin’ is made by extracting antibodies and other molecules from the blood of horses that have been vaccinated against diphtheria. To work, the potion has to be administered as soon as symptoms appear because it cannot undo the damage caused by toxin that has already entered body tissues.

During the past 10 years, researchers have been trying to find drugs that can kill the diphtheria bacterium. Researchers at Brandeis University in the USA discovered the switch that starts production of diphtheria toxin, a protein called DtxR. They have determined the exact atom-by-atom structure of this protein and drug designers are now looking for compounds that can deactivate the switch before the toxin is released and so save the lives of diphtheria victims that would otherwise die.

Hepatitis B

Another serious illness you may encounter when travelling the globe is hepatitis B. It is caused by the hepadnavirus but the source in half of all cases is not known. However, sexual transmission, needle sharing among drug users, tattoos and transmission from mother to unborn child cause the other half of cases. The virus incorporates itself into the DNA of liver cells, leading to chronic liver damage and potentially liver cancer. Fortunately, vaccination before exposure provides lifelong protection.

Researchers have also discovered antiviral drugs to treat hepatitis B. These drugs resemble the nucleotide molecules that act as the natural building blocks of viral DNA (the virus’ genetic code). The fake building blocks have unreactive fluoro groups instead of hydrogen atoms at strategic positions. So, once the virus starts to use these fake molecules the duplication mechanism is jammed because unreactive fluoro groups cannot be removed to attach the next nucleotide in the chain. Viral replication is significantly slowed down, giving the immune system a chance to overwhelm the disease.

Unfortunately, the viral DNA is prone to damage, or mutations, which lead to changes in its genetics. Most mutations stop the virus working but occasionally one will benefit the virus. If, for instance, the mutation changes the virus so that it ignores the fake building block, then the antiviral drug will fail and the virus continues to replicate, passing on the mutant genes (DNA fragments) to its offspring.

Some strains of hepatitis have already evolved resistance to antiviral drugs, so scientists are desperately trying to discover replacements that might work together to defeat viral resistance.

Rabies

If you are bitten by a dog or other mammal — notably a bat — when travelling, the wound itself is the least of your worries. Rabies is yet another viral disease best avoided. Its name derives from the Latin word for madness or rage, and it leads to a fear of water (hyrophobia), foaming at the mouth, a swelling of the victim’s brain, and ultimately death. Louis Pasteur and Emile Roux developed a vaccine in 1885, but it only works if administered before symptoms appear.

In 2006, scientists in Brazil investigated the potential of a group of natural plant compounds, phenolic compounds, as antiviral drugs to treat rabies. They discovered that just three of a whole range of compounds tested had some antiviral activity. The structures of these three compounds — 3,4,5-trimethoxybenzoic acid, 3,4,5-trimethoxyacetophenone, and 3,4,5- trimethoxybenzoic acid ethyl ester — could provide a starting point for designing more effective compounds. There is no way of predicting how long that might take and any potential drug would have to go through safety tests and clinical trials before it could be used in medicine, which might take up to 10 years. In the meantime, vaccination remains the only defence, that and avoiding rabid animals.

Typhoid

The disease that killed Alexander the Great, typhoid fever is alive and well across the globe. The Salmonella typhi bacterium multiplies in the blood and spreads by ingestion of food or water contaminated with infected faeces. The bacterium causes a high fever, headache, aching muscles, and death in severe cases.

Previously, antibiotics, such as ampicillin and chloramphenicol, were the standard treatment and saved many lives. However, like so many other diseases, typhoid has evolved resistance, particularly in India and South East Asia. Vaccination, if you’re travelling in affected areas, is therefore essential.

Tuberculosis

Tuberculosis, or TB, a disease once consigned to the history books is now carried by a third of the world’s population. TB is a bacterial infection and as with viruses the bacterial DNA, its genetic code is susceptible to mutations that can help it evolve resistance to antibiotics. This has already happened in many parts of the developing world and among certain sections of society such as the homeless, drug users, and HIV sufferers.

However, the issue of resistance is more complicated than it at first appears. A study published in March 2007 in the Journal of Infectious Diseases suggests that most cases of drug-resistant TB may be due to new infections rather than acquired resistance to the antibiotics. If this research is confirmed it might help scientists devise a new strategy for stopping the spread of this disease.

Malaria

Malaria kills up to three million people each year. Malaria is caused by the Plasmodium parasite carried by infected mosquitoes. The parasites are carried into a person’s bloodstream by a bite from an infected mosquito, they then multiply in the liver and the blood causing a lethal fever.

There is no vaccine against malaria, but there are drugs that protect you from infection. Plasmodium, like many viruses and bacteria, has also evolved resistance to some of these drugs. However, a novel drug derived from Chinese medicine, known as qinghaosu, works well in treating the disease and so far has staved of resistance.

There is a great deal of research underway to find novel drugs to defeat malaria. Scientists at the Toronto General Research Institute and Ontario Cancer Institute recently, for instance, discovered a synthetic compound that targets and kills malaria parasites, including one drug- resistant strain. In January 2007, researchers at Northwestern University in the US worked out how the parasite tricks red blood cells into engulfing it and so perpetuating its lifecycle. New drugs aimed at blocking this process might beat malaria.

Today, most of the diseases we have discussed are confined to the developing world where they pose an enormous public health problem and one that usually affects privileged Westerners only when they travel to such places. However, if climate change occurs some of these could spread to the developed world. Unless we can halt global warming, the time may come when you could catch some of these diseases just by staying at home. Stepping in donkey droppings will then be the least of your worries.

Where in the world?

A selection of souvenirs you might pick up on your travels

Diphtheria – bacterium: former USSR, South America, Northern Africa
Hepatitis B – virus: Africa, parts of Asia, China
Rabies– virus: global, except Australia, New Zealand, UK, Norway, Sweden, Japan,
Singapore, Guam, Taiwan, Fiji, Hawaii
Malaria– mosquito-borne parasite: Africa, Asia, South America
Tuberculosis– bacterium: global, common in Southern Africa, Asia, South America, former USSR
Typhoid – bacterium: Africa, Asia, South America

You can obtain specific advice on diseases via the WHO and CDC sites. Your doctor or national health organisation may also produce online information. For those in the UK that can be found here.

Make Music, Boost Brain

Power of musicI’ve played guitar – classical, acoustic, electric – for over three decades, ever since I pilfered my sister’s nylon string at the age of 12, although even before that, I’d had a couple of those mini toy guitars with actual strings at various points in my childhood. Even though I never took a single guitar lesson, I eventually learned to follow music and guitar tablature, but was only really any good at keeping up with a score if I’d already heard someone else play the music, it don’t mean a thing if it ain’t got that swing…after all.

Meanwhile, I took up singing in a choral group (called bigMouth) and have felt compelled to become ever so slightly more adept at reading music in a slightly more disciplined environment than jamming on guitars with friends. Big Mouth formed in the autumn of 2007 and we meet weekly for singing practice and have now done a few small “local” gigs. We even put together a last-minute audition video tape for the BBC’s Last Choir Standing, but didn’t make it through to the heats, (un)fortunately.

Anyway, that’s probably enough detail. The point I wanted to make is that until I joined Big Mouth and began making music regularly with a group, I’d always felt like I was quite useless at remembering people’s names. Like many people I’d always had to make a real conscious effort to keep new names in mind. However, in the last few months, with no deliberate action on my part, I’ve noticed that I seem to remember stuff like fleeting introductions, the names of people mentioned in conversations, or press releases and other such transient data much better than before.

I’m curious as to whether it’s the ever-so-slightly more formal discipline of group music practice that’s done something to the wiring in my brain or whether it’s simply to do with expanding one’s social group in a sudden burst like this. Ive heard of people claiming increased brain power after taking music lessons, here you can find piano teaching resources. It’s probably a combination of both and my suspicions about the power of music for boosting the brain are bolstered somewhat by a recent TED talk from Tod Machover and Dan Ellsey on the power of music

I also wonder whether there’s some connection with the Earworms concept for language learning, which I reviewed back in 2006.

Heavy Metal and Alzheimer’s

Heavy metal bassMore popular science news with a spectroscopic bent from the desk of David Bradley, this week: Heavy metal and Alzheimer’s – While the protein-like plaques that form in the brains of people with Alzheimer’s disease and in other tissues in a wide range of different disorders are well known, what is less well known is that fairly high concentrations of transition metal elements, including copper, iron, and zinc, are also present. Do these metals have a role to play in plaque formation or are they a side-effect. New research using X-ray and NMR spectroscopy could shed light on the issue and perhaps one day lead to new approaches to therapy based on controlling these metals.

Forgetful quanta – Researchers have, for the first time, monitored oscillations in a vanadium-based molecular magnet. These so-called Rabi oscillations are characteristic of the disturbances that have so far prevented scientists developing a viable quantum bit, or qubit, for use in the next generation of probabilistic computers and encryption devices. According to one independent commentator, the research represents the passing of a milestone on the road to quantum computers. Now that scientists understand the cause of this problem they might be able to address it by swapping atoms with spin for isotopes with zero spin and so cut down on the noise.

More spec news from DB and others on spectroscopynow.com

Naturally Fibrous Mimic

One of the important components of the extracellular matrix is collagen, which comprises the major structural protein component of higher organisms. However, it remains a major challenge to emulate the unique structural and biological properties of native collagenous biomaterials in synthetic analogues. Consequently, numerous opportunities exist for synthetic collagens in biomedical applications as extracellular matrix analogues, if the appropriate materials could be constructed that retain and expand upon the desirable properties of native collagen fibrils.

The exploration of chemical and molecular genetic techniques to design and synthesize collagen-mimetic polypeptides and fibers that are competent for self-assembly into structurally defined protein fibrils is an intriguing avenue for exploration. In this context, Shyam Rele and colleagues have been leading the efforts in the de novo design of nanostructured biological materials through self-assembly of peptides and proteins.

Rele, together with Elliot Chaikof and Vince Conticello in the Laboratory of Bio/Molecular Engineering and Advanced Vascular Technologies at Emory University School of Medicine have been successful in designing and synthesizing the first ever Synthetic Collagen Peptide system which is a 36 amino acid long unit which self-assembles into a fibrous structure with well-defined periodicity reminiscent of native collagen observed in the human body.

Specifically, the synthesized peptide protomer which is made up of three heterotrimeric peptide repeat units contains a hydrophobic proline-hydroxyproline-glycine core flanked on both the sides by distinct sets of peptide repeats containing either negatively (Glutamic acid) or positively (Arginine) charged amino acid residues. When positioned appropriately, these charged amino acids bias and adopt the triple helical self-assembly which undergoes fibrillogenesis at physiological temperatures producing D-periodic microfibers driven through electrostatic interactions.

Transmission electron microscopy on annealed samples revealed that fiber growth proceeded within several hours by initial formation of smooth fibrils that were hundreds of nanometers in length and tens of nanometers in diameter. These fibrils displayed tapered tips similar to the tactoidal ends of native collagen fibers from which continued fiber growth is thought to occur. The D-periodicity of the synthetic collagen-mimetic microfibers was approximately 18 nm. Significantly, the collagen mimic shows a high propensity for self-association following a nucleation-growth mechanism even at lower concentrations (<1.0 mg/mL) and neutral pH. This following discovery for making human collagen in the laboratory is pathbreaking in the field of nanotechnology and bio-inspired biomaterials. Several scientists for the past three decades have been trying to synthesize and emulate collagen's remarkable properties and have failed in their attempts to mimic the long, fibrous molecules found in nature. The ability of Rele, Chaikof and Conticello to generate a synthetic collagen in a laboratory (in vitro) on a nanomolecular level for the first time, therefore represents an important milestone in nanotechnology and biomaterial development. Such self-assembling peptides may have broad applications in medicine, neurodegenerative diseases, protein folding catalyst design, bio-nanotechnology, tissue engineering and origins of life research. Furthermore, generation of such nanostructured molecules which mimic native structural proteins will lay the future ground work for unraveling complex phenomena including collagen fiber formation in protein conformational diseases and for the design of new materials with biological, chemical, and mechanical properties that exceed those of currently available synthetic polymers.

The propensity to generate such self-assembling, biologically compatible peptide scaffolds to arrange themselves into fibers, tubules, and a variety of geometrical layers, establishes an important substrates for cell growth, differentiation, and biological function, and will have an important impact in the treatment of cardiovascular, orthopedic, and neurological disease.

Adapted from a write-up supplied by Rele. Further details can be found in JACS, vol 129, 14780-14787.