Understanding Disease Transmission and Control

The SARS epidemic of 2002-2003 was rather unusual, began Professor Roy Anderson FRS of the Department of Infectious Disease Epidemiology, at Imperial College London. For instance, its transmission efficiency was low by comparison with viruses such as Influenza A, it had a high case fatality rate especially amongst the elderly, and there was a high incidence of infection and among health workers.

In regions badly affected by SARS there was much suffering, many deaths, serious disruption to social and work activities, and considerable economic losses. The isolation and quarantining of hundreds of thousands of people became essential to bring the disease under control as too were the tight restrictions on travel in some countries. The World Health Organization also played a vital role in co-ordinating the international response and helping to bring the disease quickly under control. We were very lucky this time round, he said. Draconian public health measures are relatively simple to implement in China and other neighbouring regions where this particular disease originated, but how would the people of North America and Western Europe cope with such restrictions on their liberties as mass quarantining?

The cause of SARS was narrowed down to a single coronavirus and diagnostic tests of varying precision have been developed to help us detect it. Epidemiological research must now be carried out to help us understand how the disease spreads, especially given what is actually a very low transmissibility of the virus, compared with influenza. Data capture and information capture systems were put in place somewhat late during the epidemic. In future outbreaks this area needs to be improved so that researchers can gather knowledge about the disease’s epidemiology. During the SARS epidemic data capture systems were more effective in some regions and entirely ineffective in others. An international, centralised database would also allow doctors to record the effects of different medicines on the disease and so provide useful information for other doctors an in the longer-term epidemiologists.

We were extremely lucky with the SARS epidemic, said Anderson. SARS caused a around 800 or so deaths, influenza type A kills 30000 people in the USA every year. In the next global epidemic, we may not be so lucky in terms of biology or where the disease emerges. He suggested that we must keep SARS in perspective but not become complacent and assume that “we have been successful once, we will be again”.

The emergence of SARS

Professor Nan Shan ZHONG of the Guangzhou Respiratory Disease Research Institute suggested in his talk that he would probably raise more questions than he would make conclusions. The first case of SARS in China was recorded on 25th November 2002, and he saw his first definite case in December. The subsequent outbreak of the disease caught the world’s health systems unprepared. The worst Chinese epidemic was in Beijing with 2500 cases, while Guangdong province, where SARS first emerged, had some 1500 cases. The result was serious impact on social stability, particularly in China, and ultimately on the global economy.

From both the clinical epidemiological and virological points of view, SARS originated in the Guangdong province of China. Data showed that there may have been interspecies transmission between wild animals and humans, explained ZHONG, and a national campaign to kill rats as one possible source of infection was instigated by the government. As ZHONG pointed out, while rats harbour many diseases it is other animals, in particular the palm civet, which has been demonstrated to be the host of the emergent virus. The virus was found to be highly concentrated in the civets’ faeces and the first cases in 2002 occurred among animal traders. ZHONG believes it imperative these animals are culled and their use in cuisine be stopped.

ZHONG suggests that the health authorities must remain alert for the possible resurgence of SARS during the winter of 2003-2004 and into the spring. Indeed, the Provincial Department of Health in Guangdong has formulated a pre-warning policy based on early identification based on antibody lab tests. With early reporting, early isolation must be enforced to allow the health services to manage a resurgence.

Professionals have now been trained to identify the disease quickly and accurately and a report network has been established throughout mainland China to ensure a rapid response to new SARS cases. ZHONG told the meeting that in the previous three weeks three new cases of SARS had emerged.

Should the disease re-emerge, corticosteroid and non-invasive ventilation should be reiterated as the treatment of choice for patients with critical SARS. Traditional Chinese medicine (TCM) may also have use in early adjunctive therapy. An inactivated SARS vaccine is now in clinical trials and early results suggest it is safe and efficacious and may be available in an emergency.

Fighting SARS in China

Victory over the first SARS epidemic resulted from the efforts of the medical and scientific communities and the political commitment of the authorities in China with strong international support; the causative agent having been identified within two weeks of the outbreak, said Professor CHEN Zhu Vice President of the Chinese Academy of Sciences (CAS). Two weeks later, the SARS genome was unravelled.

Three programmes have now been implemented under the Chinese taskforce – research into causes and effects, diagnosis, treatment and prevention, and drug and vaccine development.

The initial SARS infections, which were seen among restaurant researchers in particular, were rather weak, and reminiscent of the state of play at the time of the meeting in the advent of a SARS second coming. It was then the infamous “Super-Spreader” event in Guangzhou Second Hospital, which evoked the epidemics in Guangzhou, the second phase, and then the Hotel M event that ultimately led to the massive scale of the SARS epidemic, the third phase to Northern China and other countries/regions in the world. Comparisons of the genome at each phase together with information about the relation between human SARS and the disease in the animal carriers, palm civets, is providing important clues about controlling SARS and vaccine development.

With regard to diagnosis, treatment, and protection, CHEN added that Guangzhou’s Prof. ZHONG Nan Shan is something of a hero in China for having first identified SARS as a new pathogen; he and his collaborators developed effective treatments using corticosteroids, antiviral drugs and non-invasive positive pressure ventilation, as well as integrating it with Traditional Chinese Medicine.

Diagnostic tools and kits have been developed in response to the first epidemic are now revealing themselves to be critical in controlling the recent appearance of SARS cases in 2004. Physical protective equipment for personal and hospital use are also being rapidly developed, added CHEN. The Chinese government has issued new security guidelines to help it cope with another outbreak. The scientific conservation of samples of the SARS coronavirus for further researchers is another important measure that CHEN mentioned briefly.

Beijing researchers had reported at the time of the meeting the effectiveness of inactivated SARS viral particle in laboratory tests, but says CHEN , many questions remain to be answered before a safe and effective vaccine will be ready.

The lessons of SARS have led to open reporting, especially in China, which means “next time”, the international health and research communities will be better equipped to respond.

The victims of SARS

Robert Maunder’s hospital, the Mount Sinai Hospital in Toronto, was on the frontline during the SARS epidemic. One aspect of such an epidemic that does not always immediately come to mind is the psychological impact on health workers.

The outbreak of SARS in 2003 provided a system-wide stress upon healthcare workers in the Toronto region, said Maunder, reminding us of when public-health messages were common and quarantine widely used. To understand the psychological impact on hospital staff and the wider community, we should recall the eighteenth century when hospitals were considered places to die rather than centres of healing.

The disease hit Toronto in two waves, said maunder. The first wave had a major impact on Mount Sinai Hospital allowing the researchers to survey of healthcare workers at three hospitals in late May. The effect of stringent controls put in place meant no visitors and non-essential staff ordered to stay home. The public perception of hospitals was severely affected, hospitals were seen as places with disease, and healthcare workers were seen as victims and carriers of disease.

Maunder’s team has studied data from two sources of information. First, observations by he and his colleagues of administrators and mental health professionals providing support during the SARS epidemic in March and April, and a survey of about 1600 healthcare workers at three Toronto hospitals in May and June. The results provide a picture of the factors which lead the SARS outbreak to be experienced as a psychological trauma.

Maunder described how more than 35% of those surveyed reported severe stress symptoms, including intrusive thoughts and feelings and avoidance and blunted feelings. The degree of risk of traumatic stress was related to degree and duration of exposure to SARS patients as well as other factors. These included isolation from family and colleagues, and the wider community as well as job stress, and problems with family life. Rules prevented colleagues shaking hands or eating in the hospital cafeteria compound the problems leading to poor sleep, anxiety, and preoccupation with signs of illness among many healthcare workers.

There is a psychological cost to controlling a disease like SARS, said Maunder. This must be considered when planning the public-health response and invaluable psychological support provided during the early stages of an outbreak.

New hosts for new diseases

Biologist Dr Diana Bell of the University of East Anglia, Norwich, immediately drew three conclusions about the nature of emerging diseases like SARS.

First, she suggested that the search for diseases of animal origin should be extended, not only geographically, but also to small carnivores other than the masked palm civet from which SARS emerged. Secondly, there are major ecological shifts favouring the emergence of zoonotic diseases, in South East Asia. Thirdly, new collaboration between conservation biologists and vertebrate ecologists would help in finding and controlling such diseases.

The search for disease has focused on the animal markets of Southern China, but many of the animals traded here are illegally imported. The animal reservoir for SARS and other viruses could extend far outside China. Moreover, China’s neighbours in the Indochina hotspot of biodiversity – Cambodia, Laos, Thailand – also exploit wild animals in the restaurant trades, traditional medicine, perfumes, skins for clothing, and as pets. The limelight has shone on three small carnivore species: the masked palm civet, Chinese ferret badger, and raccoon dog. Many other endangered species are also exploited.

Bell suggested that putative hosts must be screened across all routes from capture to marketplace and beyond. This would allow researchers to pinpoint at what point the animals first show signs of infection.

Wildlife trade is a global problem, not restricted to South East Asia. African civets are eaten as bush meat and should be screened. Moreover, the problem is very much a global one. Huge numbers of wild animals are imported into the USA each year, including 49 million live amphibians and 2 million live reptiles. The wildlife trade, Bell said, is not only a threat to biodiversity but seriously threatens human health.

To combat this trade, it is important to hit supply and demand, said Bell. Better law enforcement and community participation as well as education could be key to reducing the demand for wild meat.

Read on in Session 4:

Listening out for one-over-f noise

One over f noiseThe universe is a noisy place – from traffic growling along roads to the random fluctuations in DNA sequences and from the distribution of stars in galaxies to the hissy fit that is electronic noise. One thing all these forms of noise have in common is they are related by the phrase “One-over-f”, the reciprocal of frequency.

A new understanding of “1/f” has emerged from a collaboration between scientists in Norway, Russia, and the USA. Their work could lead to more sensitive sensors and detectors based on semiconductor electronics.

According to materials scientist Valerii Vinokour of Argonne National Laboratory, Illinois, “Finding the common origin of one-over-f noise in its many forms is one of the grand challenges of materials physics,” he says. He and his colleagues have developed a new theory of 1/f noise establishes its origin and lower limit in semiconductor electronics, which could help developers optimize detectors for commercial applications.

Noise is nothing more than timely fluctuations, deviations from the average. In microelectronics, noise is generated by random fluctuations of electrons. Vinokur and his colleagues report in the May 11 issue of the science journal Phys Rev Lett how 1/f noise in doped semiconductors, the platform for all modern electronics, originates in the random distribution of impurities and the mutual interaction of the many electrons surrounding them.

These two ingredients – randomness and interaction – lead to electrons being trapped in a Coulomb glass state in which electrons hop randomly from point to point.

“Our results,” Vinokour explains, “establish that one-over-f noise is a generic property of Coulomb glasses and, moreover, of a wide class of random interacting systems and phenomena ranging from mechanical properties of real materials and electric properties of electronic devices to fluctuations in the traffic of computer networks and the Internet.”

Martian volcanoes hit home plate

Mars home plateA plateau on the planet Mars called Home Plate looks like it had a volcanic past, according to the latest data from NASA’s rover Spirit. The data also support earlier hints at that water once existed at or beneath the planet’s surface.

Home Plate has a finely layered appearance and so made it a tantalizing target for Spirit, according mission controller Steve Squyres. The rover captured its first panoramic image of Home Plate in August 2005 from the summit of Husband Hill and reached the plateau in the Columbia Hills’ inner basin in February 2006. Squyres called one of those images, “one of the neatest pictures we’ve taken with the rovers.”

The image shows nothing more than a small (4 cm) fragment of rock cradled within a downward deflection in otherwise straight layers. Earthly geologists refer to such features as bomb sags and they are usually formed only when a rock fragment (the bomb) is flung upward in an explosion and lands in soft material, causing it to sag.

Chemical analysis has demonstrated that the Martian rock is composed of basalt, a volcanic rock, which precludes it being a meteorite. The rock also carries tiny coagulated ash particles, which could only be present after ash rains down following a volcanic eruption.

NASA says any volcanic activity at Home Plate probably occurred billions, of years ago. “There are lots and lots of places on Mars where, from orbit, you see layered deposits locally that kind of look like this,” says Squyres, “and so it really raises the possibility that a lot of these things all over the planet could be explosive volcanic deposits.”

The fact that the Home Plate rocks are basalt also suggests water may have been present. Basalt is not normally associated with explosions. “When basalt erupts, it often does so as very fluid lava, rather than erupting explosively,” Squyres explains A notable exception comes when hot basalt meets water to cause a steam-driven explosion.

The Science paper is based on data collected during a frenetic few months in 2006, as Spirit was rolling down the Columbia Hills toward a safe place to ride out the Martian winter. The route to safety included a path across Home Plate – leaving Spirit’s drivers on Earth with a dilemma.

“There was all this fabulous science around us,” Squyres says. But with winter approaching, the team had to get Spirit to its safe spot on time, while gathering as much data as possible along the way. “We got an amazing amount of science done, all things considered,” he said. “But there’s more work to be done here.” Spirit is now back at Home Plate, continuing exploration there.

The team published further details of their findings in Science this week (2007, 316, 738-742).

Open access medical records

Open access medicineFancy being a case report for medical scientists to ponder? If your answer to that question is yes, then you probably carry a donor card, regularly give blood, and have already willed your body to medical science. If the answer was no, then read on, the following may persuade you to if not donate your remains then perhaps make yourself a case in point.

Medical case reports serve a vital role in medicine. Like those howto and self-help feature articles one sees in popular lifestyle magazines, they focus entirely on an individual patient, but at a slightly more technical level. Case studies provide unique insights into the rare side effects of new medications, early warning indicators of potential new diseases, unexpected associations between diseases or symptoms, and much more. Indeed, it was through case reports in the medical literature, that the earliest information on AIDS, Lyme disease and toxic shock syndrome emerged.

In recent years, however, economic and ethical pressures have led research journals to publish fewer and fewer medical case reports. The main pressure seems to be that such papers are of limited interest when read in isolation and more problematic from the publishers’ point of view are unlikely to be highly cited. Many research journals tout citation counts as a major selling point both to authors and subscribers, so poor-selling papers are unattractive to the marketing team.

The end result, is that a vast wealth of unique scientific data is simply lost.

Michael Kidd, Professor and Head of the Discipline of General Practice at the University of Sydney, hopes to change all that. He is founder of the open access (OA) Journal of Medical Case Reports. The OA approach taken by this journal means that medical case reports can find an audience regardless of citation concerns. By utilizing the OA publishing model, interesting case reports can reach the medical profession where previously they would simply sink without trace. With open access to this information, doctors can easily compare symptoms and treatments between patients and researchers and can sift through thousands of reports to formulate hypotheses and search for patterns and correlations. Who knows when the next AIDS or Lyme disease will emerge. Case reports might provide the first hints from the unfortunate “early adopters.”

Cocaine in a can

Cocaine structureDespite appearances, anyone hoping to get some kind of a buzz from a soft drink marketed as “Speed in a Can,” “Liquid Cocaine” and “Cocaine – Instant Rush”, will get nothing more than a potentially harmful spiking of their blood sugar concentration and a dash of the stimulant caffeine. The soda in a red can with an almost familiar logo, actually contains no illicit drugs and is supposedly marketed only as an energy drink and food supplement. The product has been sold since August 2006 in at least a dozen US states, but has come under attack from the FDA (Food and Drug Administration) and was this week pulled from supermarket shelves.

The FDA website shows the full warning letter sent to manufacturer Redux Beverages LLC of Las Vegas, which outlines how the marketing for this product is in breach of several US laws. According to the original Redux website, the drink “Cocaine is marketed as an alternative to an illicit street drug, and certain ingredients contained therein are intended to prevent, treat, or cure disease conditions.” All such claims are illegal under US law. One claim in particular seems to suggest that there is more to “Cocaine” than meets the eye: “This beverage should be consumed by responsible adults. Failure to adhere to this warning may result in excess excitement, stamina, . . . and possible feeling of euphoria,” it says. But, which company would be so stupid as to suggest that its soft drink contains actual cocaine? Of course, it is no urban legend that the original formulation of an older soft drink today bought in red cans with an all too familiar logo did indeed contain said illicit pharmaceutical, but is no longer used.

Clegg Ivey, a partner in Redux is on record as saying, “We like to think we have a great sense of humor…And our market, primarily folks from ages 20 to 30, they love the ideas, they love the name, they love the whole campaign. These are not drug users.”

They really love it, do they? What could be lamer than a bunch of deluded twenty and thirty somethings who do not use cocaine, imbibing a soft drink marketed as “liquid cocaine”? I can almost see a big “L” for loser hovering in front of their foreheads as they chug the stuff.

InChI=1/C17H21NO4/c1-18-12-8-9-13(18)15(17(20)21-2)14(10-12)22-16(19)11-6-4-3-5-7-11/h3-7,12-15H,8-10H2,1-2H3/t12?,13?,14-,15+/m0/s1

Do heavy metal fans get skin cancer

Denim jacketAs it is a holiday across the UK today, there is probably little need to warn Brits of the dangers of the sun’s rays, it’s usually so cold and wet, that the chances of frostbite and rust are much higher than sunburn. That said, summer is on its way and a paper in the latest edition of the Lancet medical journal warns that sunscreen and light cotton clothing are simply not enough to protect you from skin cancer caused by exposure to ultraviolet light from the sun.

Instead, the paper’s author suggest that anyone who dares to partake of the great outdoors should wear heavy cotton clothing such as denim, wool, or polyester, to block out those damaging rays. But, should this advice be well taken? Is the sun really to blame for the apparent increased incidence of skin cancer we hear reported or could it be that our car and desk bound sedentary lifestyles in which most people barely see the sun except on their foreign holidays are more to blame for compromising our immune systems and making us more susceptible to skin and various other forms of cancer.

We’ve covered this issue previously in Sciencebase, recent evidence points to a lack of vitamin D (manufactured in the skin during sunlight exposure) as being a much higher risk factor for various cancers than sun exposure itself.

The Lancet Review authored by dermatologist Stephan Lautenschlager of Triemli Hospital, in Zurich, Switzerland, analysed the various sun protection strategies used around the globe. “Wearing sun protective clothes and a hat and reducing sun exposure to a minimum should be preferred to sunscreens,” the team writes, “Often this solution is deemed to be unacceptable in our global, outdoor society, and sunscreens could become the predominant mode of sun protection for various societal reasons, for example healthiness of a tan, relaxation in the sun.”

The Review says that linen and loosely woven cotton represent less effective sun protection and that tightly woven, thick garments made of denim, wool or polyester offer the best protection; not exactly the kind of clothing anyone but heavy metal fans would want to wear on a scorching hot sunny day.

The paper points out that several studies have shown that sunscreen protects against acute UV skin damage and non-melanoma skin cancer, it is not known whether sunscreen stops melanoma developing. And, perhaps therein lies the rub, the connection between sunlight exposure and skin cancer itself is not as cut and dried as some commentators suggest.

“Suggesting wearing denim in hot weather is I think so stupid – it is very uncomfortable. Special clothing is not needed in the UK – on rare very hot days it is better simply to seek the shade – after some exposure to get your dose of D without burning, says Oliver Gillie of London-based lobby group Health Research Forum. He points out once more, that insufficient exposure to sunlight could be doing us more harm than good in terms of increasing cancer risk because of a lack of vitamin D.

“A link between heart disease and insufficient vitamin D is emerging,” he told Sciencebase, “and the National Heart Forum is interested in this aspect of the debate.” Given that until now the sunlight and skin cancer debate has essentially been a Cancer Research UK monopoly, it will be interesting to see how the heart charity approaches the issues.

There have been numerous other research developments that have not seen the media light of day. “There are links with infectious disease,” adds Gillie, “Vitamin D is important for maintaining immune system resistance a fact well-known to those treating tuberculosis a century ago and well before the advent of antibiotics.”

Cancer Research UK says that 90% of melanoma is caused by sun exposure. “This is a very contentious figure,” Gillie points out, “and is disputed.” He adds that it could be that as few as one in ten melanoma cases are caused by sun exposure. “Poor immunity is a big factor in melanoma and people who are on immune suppressing drugs e.g. transplant patients are at high risk,” he says.

Such observations certainly cloud the picture of sun exposure as the big skin cancer killer. He also points out that purported mechanisms for DNA damage and thence skin cancer formation based on the photochemistry of DNA itself no longer stack up because it is now known that melanin, the pigment that gives rise to a tan is a protective agent against the very mutagenic molecules thought to form on sun exposure. Indeed, Raymond Barnhill and colleagues writing in the Journal of the National Cancer Institute (2005, 97, 195-199) found that people with melanoma survive longer if they have more sun exposure. This is doubly ironic in that post-treatment melanoma patients are usually advised to stay out of the sun.

If the British weather is kind for once this Bank Holiday Monday, it will pour sunshine down on all of us. So, leave the denim at home, unless you are a heavy metal fan, and make sure your icecream doesn’t melt while you are sunning yourself.

Killer Shellfish – Domoic Acid

Domoic acidDomoic acid, a toxin produced by algae that can infest shellfish, is to blame for the recent spate of deaths from seafood poisoning, according to reports. The California Department of Health Services has detected elevated levels of domoic acid in sardines and mussels from coastal counties.

Domoic acid is synthesized by the microscopic alga, or diatom, Pseudo-nitzschia. Shellfish, including molluscs and crabs, ingest the algae, and so accumulate the toxin, ready to pass it on to some unsuspecting seafood diner. In large enough concentration, domoic acid causes amnesic shellfish poisoning. Symptoms occur within 24 hours and include vomiting, nausea, diarrhea and abdominal cramps. After a couple of days of such unpleasantness, short-term memory loss, dizziness, and confusion, can occur in severe cases as well as motor function problems, heart palpitations, and potentially coma and death.

Unfortunately, the toxin is not destroyed by cooking.

A total synthesis of domoic acid was carried out in 1982 by Yasufumi Ohfune and Masako Tomita of the Suntory Institute for Bioorganic Research, Japan, who corrected the initial structure report. (JACS, 1982, 104, 3511-3513).

InChI=1/C15H21NO6/c1-8(4-3-5-9(2)14(19)20)11-7-16-13(15(21)22)10(11)6-12(17)18/h3-5,9-11,13,16H,6-7H2,1-2H3,(H,17,18)(H,19,20)(H,21,22)/f/h17,19,21H

Molecular wolfram demonstrations

Buckyball mathematicaThe Wolfram Demonstrations Project launched this week and represents what the developers describe as “a major new resource for research and education”. Well, that’s as maybe, but what is it? The project was first conceived by Stephen Wolfram creator of the Mathematica software that as its name suggests allows computers to produce visualisations of mathematical concepts.

The project sits under the umbrella of open-code and uses dynamic computation to bring Mathematica’s prowess to bear on a range of endeavours in science, technology, mathematics, art, finance and more. You do not actually need Mathematica to try out the site, but interactivity comes into its own if you have the program on your system.

The Demonstrations site presents a good gallery of examples of what’s possible in Mathematica 6, although it is not yet complete in the sense that users and others can provide input and help it develop still further. “The Demonstrations are contributed by a mix of Wolfram employees and Mathematica enthusiasts,” site Manager Joe Bolte told us, “so some topics are better represented than others.” He adds that, “Now that the site development is largely complete, we should be able to use Mathematica’s strength’s to quickly help chemistry
catch up to our better represented topics.”

Which brings me to my first search. I did the obvious one for a chemist visiting the site and typed “molecules” into the search box. Just three demonstrations with that keyword came up – Insulin molecule, Lotus effect, cluster of 120 spheres. The insulin shows a mutant protein based on data from the Brookhaven Protein Data Bank and allows you to rotate the molecule in 3D, to hide and reveal various atoms, and to zoom in. Everything that chemists are used to doing with Chime or JMol.

Lotus is a little more gratifying. This demo places spheres on a larger sphere, copies this assembly and places the duplicates on a still larger sphere. It heads towards a fractal structure and so can mimic the surface morphology of lotus leaves, which have incredible self-cleaning and water repellent properties. You can see an artificial lotus leaf surface in action in our video section.

The Lotus demo allows you to vary the size and spacing of the virtual balls and so allows you to emulate molecular and atomic clusters and viruses. There are other specialist tools for doing such manipulations with more accurate models of such entities, but the demonstration does indeed produce some very or ornamental images.

The final demonstration that showed up in my search also simulates molecular structure in a novel way. In this producing 3D models that resemble the shape, but not quite, of the [60]fullerene molecule, better known as the buckyball. Although such a representation may not be accurate in terms of the chemistry, playing with these structures could inspire new ideas with regard to what might be possible experimentally in terms of geometry. After all, Kroto, Smalley and colleagues figured out the buckyball structure when they realized it might resemble a soccerball.

Searching for the word “chemistry” itself threw up quite a few more demonstrations related to the field, including generalized Arrhenius function, a buckyball of buckyballs, discrete reaction and diffusion, and one on carbon dating. All provide a unique view of various physical phenomena.

Mathematica is a powerful tool and the demonstrations provide a superb showcase of the kinds of graphics it can produce.

I asked Bolte more about the technical extension of the site. “Mathematica’s high-level language makes it easy to quickly display data and prototype algorithms in a way that no other software package can match,” he explains, “And new in version 6, it has built-in access to databases of relevant data that are available with a single line of code.”

The system is backed up with a range of data sources, including chemical data and element data sources. Closely related is the Periodic Table by co-founder and chemist Theodore Gray.

Local fluff is no gas

Local fluffSending astronauts up to our nearest star to reignite the Sun, the premise of sci-fi movie Sunshine, is truly the least of our problems when we are currently faced with global climate change, global terrorism, and global economic collapse. Nevertheless, astronomers are concerned about recent findings regarding the hot gas surrounding our star and its stellar neighbours. Put simply they cannot find them.

A team led by Martin Barstow of Leicester University, England, has used data from the Far Ultraviolet Spectroscopic Explorer (FUSE) satellite to map the space in between the stars within a sphere of radius 300 light years. He reported details of the observations to the Royal Astronomical Society National Astronomy Meeting in Preston in April, explaining how the FUSE results show a distinct lack of oxygen. Received astronomical wisdom has it that local interstellar medium including the whole Solar system is embedded in a wispy diffuse cloud of hot gas, the so-called Local Fluff.

The findings, or lack of finding oxygen, suggests that an ancient stellar explosion, a supernova, blew away the gas from within the local interstellar medium leaving us with a less than fluffy cloud. More in this week’s SN.

Raman and the usual substrates

My latest round up of science news over on SpectroscopyNOW.com is now online. This week, I discuss how a lot of protein research looks only at molecules at rest, but could be enriched so much more by observing how these biological molecules change step by step as they interact with each other and their usual substrates. Researchers at the European Synchrotron Radiation Facility (ESRF) and the Structural Biology Institute (IBS) have exploited the power of Raman spectroscopy to help them lock in on protein intermediates states that can then be snapped using X-rays from the synchrotron. The team can then piece together a stop-motion movie, in the style of Ray Harryhausen or Wallace and Gromit without the sword-wielding skeletons or sardonic dog.

Also in this week’s issue, dental researchers in London have demonstrated that the antibacterial solutions containing sodium hypochlorite (household bleach) and the calcium-sponge EDTA commonly used to clean up after root canal work, can actually destroy the organic content of the tooth’s dentine. I spoke to team leader, Kishor Gulabivala of the Eastman Dental Institute at University College London who pointed out that his team’s results have only so far been presented at a conference. Nevertheless, the research represents the first quantitative study of the effects of the antibacterial solutions on teeth, and suggest a need to reconsider their use in dental surgery.

Initially, I was concerned that it was their use in artificial teeth whitening that was the major issue, but Gulabivala assures me it is not. Despite this, I found several websites (amateur and otherwise) that suggest hypochlorite can be used as a bleaching agent for the teeth. Personally, I’d rather stick with yellow, stained teeth (if I happened to have them) rather than risking a mouthful of bleach.

A surgical robot that uses its own MRI scanner to pinpoint targets with microscopic precision also caught my eye for news on the SpectroscopyNOW MRI channel this week.