Stimulating dyscalculia adds up

An international team of scientists have discovered that the brain’s right parietal lobe is responsible for the disorder, dyscalculia, a kind of numerical dyslexia. The discovery made by researchers at University College London, University of the Negev, Israel, Birkbeck Centre for Brain and Cognitive Development, London, Maastricht University, Netherlands, and the Max Planck Institute for Brain Research, Germany, could ultimately lead to new methods of diagnosis and management of the disorder through remedial teaching.

Dyscalculia is as common as dyslexia and attention deficit hyperactivity disorder (ADHD) with about one in twenty people affected. However, dyscalculia has been given little regard in the mainstream despite its potentially debilitating impact on quality of life. Roi Cohen Kadosh, of UCL’s Institute of Cognitive Neuroscience explains the implications of his study, which involved inducing dyscalculia: “This is the first causal demonstration that the parietal lobe is the key to understanding developmental dyscalculia,” he explains, “Most people process numbers very easily — almost automatically — but people with dyscalculia do not.” The team stimulated for a few milliseconds the right parietal lobes of volunteers carrying out an arithmetic test, using neuronavigated transcranial magnetic stimulation (TMS) . The stimulation essentially knocked out activity in that part of the brain and left the volunteers unable to react as quickly to the test.

“This provides strong evidence that dyscalculia is caused by malformations in the right parietal lobe and provides sold grounds for further study on the physical abnormalities present in dyscalculics’ brains,” adds Cohen Kadosh, “It’s an important step to the ultimate goal of early diagnosis through analysis of neural tissue, which in turn will lead to earlier treatments and more effective remedial teaching.”

The researchers will publish details of their findings in the April 17 issue of the journal Current Biology

Natural Choice

Taxol StructureNature has provided the stock for pharmacy shelves for hundreds of years and is the ultimate medicinal chemist, according to research published in the March 23 issue of Journal of Natural Products.

David Newman and Gordon Craig of the National Cancer Institute demonstrated that less than a third of important “new chemical entities (NCEs)” found between 1981 and 2006 were entirely synthetic compounds as opposed to derivatives of naturally occurring molecules. The remaining 70% of the NCEs introduced during the last quarter century were natural products, obtained from sources such as plants and animals or designed to mimic natural product structures.

Natural products range from aspirin (originally obtained from the willow tree) to Taxol, the anticancer drug discovered in the Pacific yew tree. About half of all anti-cancer drugs introduced since the 1940s are either natural products or medicines derived directly from natural products, according to the researchers.

InChI=1/C47H51NO14/c1-25-31(60-43(56)36(52)35(28-16-10-7-11-17-28)48-41(54)29-18-12-8-13-19-29)23-47(57)40(61-42(55)30-20-14-9-15-21-30)38-45(6,32(51)22-33-46(38,24-58-33)62-27(3)50)39(53)37(59-26(2)4 9)34(25)44(47,4)5/h7-21,31-33,35-38,40,51-52,57H,22-24H2,1-6H3,(H,48,54)/f/h48H

Chemical pipe works

Chemical pipe worksMitch Garcia of UC Berkeley seems to be far more expert with the latest web 2.0 tool that lets you produce your own search algorithms than I, so I asked him to look into creating a Yahoo Pipe to allow anyone to search as many chemistry journals as possible that offer ASAP and in press papers online. And, much kudos to him, he has done just that. Here’s chemistry journals search pipe. He explains the process and the limitations in a little more detail on his own blog.

Give it a try and let us know what you think. What makes this tool totally tubular is that once you’ve run a search using a pipe, the results are their own RSS feed, which means you can subscribe to the results with your news reader (My Yahoo, Bloglines, Google Reader etc). Even more intriguing is the idea that you could presumably then use that feed as the basis for creating an even more sophisticated Pipe of your own.

For instance, this feed displays the results from Mitch’s Pipe searching all those chemistry journals for the word greenhouse. It’s quite unlikely that there will be any gardening papers in the ACS, RSC or Wiley chemistry journals, so you can be fairly sure that this feed will bring you the latest papers on greenhouse gases and their effects. Combine that with a feed for global warming, and one for climate change, and you should have the niche covered.

Orders of magnitude

Strangely, the phrase “orders of magnitude” featured in a visitor’s search efforts while browsing the sciencebase site. Unfortunately, other than using the phrase myself in the context of, for instance: “the amount of greenhouse gases emitted by human activities is several orders of magnitude smaller than those emitted by natural processes”. I did not actually have a definition of orders of magnitude on the site. Until now. So here goes:

The order of magnitude is the scale of any given amount where each class contains values of a fixed ratio to the class preceding it. The ratio most commonly used is 10. For example, a kilogram is three orders of magnitude bigger than a gram.

In the greenhouse gas instance cited above, the phrase “orders of magnitude” is simply being used colloquially and can apply in many situations, such as the volume of water in the Pacific Ocean is many orders of magnitude greater than that contained in Lake Michigan. To give a more solid example, one might say “An order of magnitude difference between two values is a factor of 10. For example, the mass of the planet Saturn is almost 100 times that of Earth, so Saturn is two orders of magnitude more massive than Earth.

Orders of magnitude are not always on the decimal scale. For instance, the difference in size between a megabyte and a gigabyte is three orders of magnitude, but the multiplier is 1024 rather than 1000. Please correct me if I’m wrong on that, I guess you could define a single order of magnitude her as being based on 1024 rather than “10”.

More on order of magnitude here.

Intelligent materials protect sports lovers

An intelligent plastic that is so flexible when left to its own devices while flow like a very slow moving liquid, but hit it with a hammer and the intelligent molecules form which it is made stiffen up instantaneously and absorb the energy of the blow. Such a polymer has been incorporated into textiles and clothing to create lightweight and flexible body armour for high-impact sports and other activities to save users from serious impact injuries. The polymer and textile-embedded material was the brainchild of UK company d3o, which has recently worked with a sports clothing manufacturer to develop a range of protective gear.

There was a video that demonstrated how to protect a falling egg using this material. This would make an excellent science fair project: compare different packaging materials for protecting eggs – cardboard, polycarbonate, d30 intelligent material. Unfortunately, the vid is no longer available.

The smart material is made up of a matrix of polymers with tiny pockets filled with a fluid. In normal wear, the material moves freely with your body movements but if you take a dive, the intelligent molecules in the fluid stiffen in less than a thousandth of a second, which makes them absorb the energy of the impact It works because under normal conditions, the polymer molecules move and slide across each other, but when they are put under rapid shear stress in an impact, for instance, the polymer molecules immediately form cross-links with one another and the material stiffens to take the brunt of the impact. Once the force is removed, the polymer cross-links are disengaged by further low force movements and the material reverts to its flexible state.

Power up your genome with chemistry

Post-genomic scienceResearchers have developed several tools to help them exploit the underlying chemistry of genomics, while novel chemistry has enabled faster, parallel sequencing methods that not only accelerate genomic research but also cut costs. The very same techniques allow sex chromosomes and complete genomes to be decoded faster and more cheaply than ever before.

Concomitantly, microfluidics technology is improving the way conventional fluorescence chemistry can be exploited in sequencing. Improved understanding of nanoscale channels – both synthetic and protein channels offers the possibility of studying individual biological macromolecules and microfabricated microarrays are opening up massively parallel opportunities. Novel chemical technologies are also opening up locked nucleic acids as well as non-DNA molecules such as microRNAs.

The so-called post-genomic era put the molecular smack in the middle of the biological quarter. Now, as cross-disciplinary communication matures, research at the intersection of chemistry and biology is working harder than ever to solve fundamental questions in science and medicine.

You can read the complete feature on the subject of chemistry in the post-genomic era from David Bradley in Science magazine today. It is the lead article on the Science Products page.

Anorexia and Kidney Disease

Anorexia nervosa is a serious and potentially fatal eating disorder usually characterized by a severely reduced appetite and often a total aversion to food. In the mainstream media, it is most commonly associated with teenage girls and the celebrity quest for a “size zero” figure. However, it is a serious and life-threatening disorder that goes far beyond the realm of body image and extreme dieting. Important clues as to the underlying causes of this disorder may be found in its association with chronic kidney disease.

According to Peter Stenvinkel of the Division of Renal Medicine, Karolinska University Hospital at Huddinge, Sweden, anorexia is observed frequently in kidney dialysis patients. The condition worsens as kidney disease progresses leading to severe muscle wasting and malnutrition, with all its associated health problems. Scientists had suggested a link to defective central nervous system control of appetite, so Stenvinkel and his colleagues have done an analysis of various biomolecules, including natural inflammatory compounds and sex hormones. Their results suggest that inflammation is closely linked to the development of anorexia in kidney patients and is more common in men than women.

Read the full story in today’s SpectroscopyNOW.

Frogs legs and AMPs

Antimicrobial peptidesSolid state NMR is unlocking the secrets of compounds found in natural membranes from frogs’ legs to human lungs that could lead to an entirely new class of antibiotic drugs. The compounds in question are antimicrobial peptides (AMPs) and they have been detected in every living creature studied so far. AMPs act as a first line chemical defence system in a huge range of organisms and could provide a novel approach to defeating drugs resistance in bacteria.

“Our overall mission is to use the kind of basic physical data we obtain from NMR to help interpret biological functions,” team leader Ayyalusamy Ramamoorthy of the University of Michigan explains. As with most discoveries of this nature, it will be several years before any clinical trials for specific health problems or diseases are complete. “How it works against viruses are under investigation in other labs,” Ramamoorthy told me.

You can find out more about AMPs as the front line defenders in the latest issue of SpectroscopyNOW.

Are you at risk of diabetes

Diabetes testBoth the UK and US national diabetes organizations have a risk test available for anyone worried about diabetes risk. Read the rest of this post and then take the tests and let me know how you get on.

You can take the Diabetes UK MeasureUp two-minute test here and/or the US diabetes risk test, although I recommend the more comprehensive (but more complicated) Diabetes UK test.

The US test is very, very simplistic, it asks you to plump for a very broad age range, asks if you have siblings or parents with diabetes, gets your height and weight, and whether you excercise or not. There is no detail in the questions at all, but then the results are very simplistic too. I truthfully filled in the blanks and scored a big fat zero. Null points. Thankfully, that means very low risk. But, I think the lack of questioning about supine waist measurement, body fat percentage and actual details about exercise, blood pressure etc, mean one would have to take this result with a large pinch of salt (actually, hold the salt, throw some sand instead, it is healthier).

I realize this is more about awareness and the tests are deliberately simplistic so that someone with a family history who does not exercise and is overweight might hopefully visit their doctor for a check up when the test shows them to be high risk.

There are over 20 million people in the US with diabetes, says the ADO, and almost a third of those (more than 6 million people) do not know it. These people need to get equipment and help for their disease like a glucometer by Dexcom.”

In contrast, the UK test is much more comprehensive and so presumably provides a better reflection of risk, it asks for waist measurement as well as ethnicity, and whether you have any cardiovascular disorders in some detail. It also asks about mental health and known metabolic disorders, as well as factors such as mental health problems. With all this additional information I still came out low risk, so I’m happy. What about you? I’d be interested to read comments from Sciencebase visitors who try either or both tests. Remember though, that if you are worried about diabetes or show any symptoms of the disease get to your GP fast.

Further information on diabetes is available from American Diabetes Association and Diabetes UK