Curious X-shooter Antibiotics

A sneak preview of my spectroscopyNOW ezine headlines for June 1:

Bi-curious microcylinders – A team in the US has produced micrometre-wide discs and elongated rods from bi-coloured and multicoloured compartments. The composite materials could have novel applications in diagnostics, drug delivery, and a new type of display technology.

X-shooter snap the cosmos – The European Southern Observatory’s Very Large Telescope now has an X-shooter, a second-generation spectroscopic instrument that can record the entire spectrum of a celestial object in a single shot – from the ultraviolet to the near-infrared – with high sensitivity. This unique new instrument will be particularly useful for the study of distant exploding objects known as gamma-ray bursts.

Attacking antibiotics – The crystal structure of a penicillin-binding protein 1B (PBP1b) has been obtained by a team in Taiwan. The research could represent a major step forward in the development of novel antibiotics against resistant strains of bacteria.

Malaria Drug Fail

The BBC reports today that malaria has started to evolve resistance to the artemesinin family of drugs that are used as the world’s front-line defense against the most prevalent and deadly form of the disease.

Artemesinin emerged from a Chinese herbal medicine, Qinghaosu, where it was used as a fever treatment for generations. I remember writing about the earliest research in my New Scientist days and have watched the drug discovery process bring us to the point where a potent pharmaceutical could, it seemed, defeat the disease…

…no more. In Cambodia, at least, resistant strains of malaria have been spotted by two teams of scientists, working on separate clinical trials who reported disturbing evidence of reduced drug efficacy.

The BBC says researchers are blaming a weak public health system and poorly controlled drug use, as well as fake drugs, produced by international criminals, for the problem. But, the problem is not really socioeconomic at all – it’s natural selection in action. We present the disease with a changing environment and it evolves to fill the niche.

Light, Trials, Balls

hollow-ballIn my SpecNOW science news column this week:

C60, C80, C0, Go! – X-ray crystallography, nuclear magnetic resonance spectroscopy, and other techniques have allowed German chemists to demonstrate their synthesis of the first non-carbon analogue of the C80 fullerene molecule. And yes, the title is an allusion to the Malcolm McClaren fashion vehicle of the post-punk era, Bow Wow Wow.

Photosynthetic disorder – An international team has used solid state NMR spectroscopy to determine the structure of the chlorophyll molecules in green bacteria that are responsible for harvesting light energy. The discovery might ultimately lead to artificial photosynthetic systems.

Clinical reflections – Clinical research studies into drug efficacy and side effects have often been laborious and time consuming, new software that analyses “anonymised” patient electronic medical records could reduce investigation times from months to minutes.

This week, The Alchemist observes evolution in the test tube in this week’s issue and ponders the notion of a plastic pancreas. The vomeronasal organ of mice reveals new chemical secrets about rotten food and sickly individuals while high-power lasers go down the tubes. Microscopic molecular balls also caught the Alchemists eye while kudos goes to soft matter pioneer George Whitesides for his winning the inaugural Dreyfus Prize in the Chemical Sciences.

Heavy Metal Packaging

Researchers in Argentina have developed a new approach to testing food packaging for trace amounts of the toxic heavy metal cadmium.

Cadmium is one of several additives used extensively in the manufacture of plastics. Regulations limit the concentration of cadmium allowable, of course. In the European Union that limit is 100 milligrams per kilogram. But, the toxic metal has a long biological half-life (10 to 30 years) and so essentially accumulates in your body on repeated exposure.

Analytical advances aside, I asked Rodolfo Wuilloud of LISAMEN, how big a problem is cadmium in food packaging? Should the public be concerned?

“The presence of heavy metals in plastic food packaging is an important problem considering the extended use of this type of packaging,” he told me, “Concentration of heavy metals should be limited in order to reduce their potential health impact resulting from their possible migration from the packaging material into food and also to ensure that such substances are not released into the environment, for example in emissions or ash when packaging is incinerated, or in leachate when packaging is landfilled.”

He adds, that it is important that the public should be aware of this problem. Concern is the first step towards getting governments to change environmental policies. “It is necessary to introduce national measures to ensure that packaging is allowed on the market only if it complies with certain requirements in their composition so as to prevent the addition of noxious heavy metals to packaging and to reduce the impacts on the environment and human health,” Wuilloud’s colleague Estefania Martinis says.

The team used room temperature ionic liquids (RTILs) as an online pre-concentration medium for flame atomic absorption spectrometry analysis of trace cadmium in plastic food packaging materials. Critically, the use of non-volatile, non-flammable RTILs instead of volatile and flammable organic solvents is helping in this regard by allowing analytical scientists to breathe new life into powerful techniques, such as atomic absorption spectroscopy, that have been labelled “old fashioned” in recent years as other methods emerged.

Research Blogging IconMartinis, E., Olsina, R., Altamirano, J., & Wuilloud, R. (2009). On-line ionic liquid-based preconcentration system coupled to flame atomic absorption spectrometry for trace cadmium determination in plastic food packaging materials Talanta, 78 (3), 857-862 DOI: 10.1016/j.talanta.2008.12.051

Spectral Alchemist

spectral-alchemistThis week, it’s my The Alchemist chemistry news column that coincides with SpectroscopyNOW updates:

The Alchemist this week catches site through his spyglass of complex interstellar molecules with a hint of raspberry and rum, and a possible way to capture carbon usefully that doesn’t require huge energy input. Geordie scientists have discovered why a breakfast fry-up could be the optimal hangover cure, a NIST team has found a way to suppress quantum errors, and flexible concrete that heals itself has been made by US materials scientists. Finally, the publicity department at the Royal Society of Chemistry could strike gold in a major PR awards thanks to its Italian Job.

Recycling carbon dioxide – A research team in Singapore has developed an alternative to simply burying carbon dioxide captured from sources such as coal-fired power stations. Their experiments used NMR spectroscopy to track the catalytic conversion of carbon dioxide into methanol under very mild reaction conditions. (Personally, I think these kinds of efforts will never likely balance the energy/resources books and will always come out costing more than they save in terms of emissions and fuel, but an interesting reaction, nevertheless).

ELISA, meet SERRS – Surface-enhanced resonance Raman scattering could be used to quickly spot the telltale signs of prostate cancer at the molecular level, according to a British team. This is the first use of a well-known ELISA colorimetric substrate as a SERRS marker.

Polymerising phosphates – X-ray crystallography has been used to identify a novel enzyme that polymerises the essential biochemical building block phosphate in eukaryotes, which include all animals, plants, fungi, and protists. The proof of principle was obtained with yeast and could pave the way to the discovery of related enzymes in other species.

Raspberries and ultraviolet skin damage – There’s no connection between the interstellar molecules mentioned earlier that just happen to taste of raspberries and this news item about how ellagic acid found in lots of different types of fruit and vegetables can protect skin cells from the aging effects of UV-B. Other, of course, than the fruity headlines the research makes possible.

Researchers in Korea have demonstrated that the topical application of antioxidant ellagic acid, which is found in certain fruits and berries, can protect against damage to the skin caused by incident ultraviolet-B radiation. Their work suggests that the compound could help protect people to some extent from the skin-aging effects of the sun.

Avoiding scanners – Efforts should be made to avoid unnecessary patient exposure to imaging devices that use ionising radiation, according to a warning from the International Atomic Energy Agency. The Agency suggests that MRI and ultrasound should therefore be more widely used instead of X-ray based imaging.

Arsenic, Aminos, X-ray, Teasing

A chemistI was offline with my family last week, walking and drinking ale in Derbyshire, so I’m a bit late in alerting you to my latest news stories on SpectroscopyNOW, they went live in my absence. So here’s the catchup:

Tyson’s toxic technique – The first accurate test for arsenic compounds in contaminated soil has been developed by US chemists. Their atomic emission approach to the problem could provide improved environmental and health assessments of contaminated sites.

Cosmic X-rays – Dutch have astronomers have, for the first time, used X-ray spectroscopy to reveal the long-sought signatures of dust in the interstellar medium, the extended X-ray absorption fine structure (EXAFS).

ET’s aminos – One of biology’s unanswered questions involves the evolution of the genetic code and the fact it uses just 20 natural amino acids as its building blocks for making proteins. A mathematical analysis of biochemistry by researchers in Canada suggests a possible answer that could have profound implications for our search for life on other planets.

Teasing with a stripline – A high-resolution NMR flow probe for microfluidic systems based on a new type of stripline detector chip has been developed by researchers in The Netherlands. The tool could be useful in direct monitoring of chemical reactions performed in so-called lab-on-a-chip devices.

Spotlight on the Alchemist

spotlight-alchemistMy April Spotlight on physical sciences news is now available as is this week’s Chemweb Alchemist.

Under the Spotlight:

Pores for thought – A solid, but sponge-like material has been synthesised by chemists in Singapore. The silica-type material has the most complicated pore structure ever reported…

Chips are down and, eventually, out – Graphene is a modified form of the all-carbon pencil “lead” material graphite and is being touted as the material of choice for a future generation of computer chips to augment, or even usurp, silicon. Now, three research teams…

Volcanic greenhouse – Volcanoes, such as Mount Vesuvius, that sit on carbonate sediments could represent a previously underestimated source of atmospheric carbon dioxide…

The Alchemist this week learns of a new inhibitor for a brain hormone receptor associated with cocaine addiction and a new approach to mass spectrometry could improve the chances of finding physiologically active compounds hidden in organisms.

A breathing organometallic capsule mimics a viral shell and can adsorb molecules bigger than its normal pore size while white wine is revealed to be almost as guilty as red in staining teeth.

In synthetic chemistry, a new approach to quickly producing bespoke carbohydrates leads to a new startup company out of Iowa State.

Finally, this week’s social news is the appointment of UCB chemist Graham Fleming to the position of campus vice chancellor of research.

Bond, Q, and Controlled Cleavage

bond-q-cleavageBond, Q, and controlled cleavage – US chemists have made an iron catalyst that can be used to rapidly break strong carbon-hydrogen bonds within molecules, up to one thousands times faster than other methods. The research could solve one of the great chemical challenges.

Depressing brain scans – The first study of its kind has used MRI to demonstrate how changes in cortical thickness may surprisingly relate brain structure to clinical depression. The large-scale US study suggests that a thinning of the right hemisphere of the brain could be a risk factor for depression.

Naturally synthetic capsules – Synthetic capsules made from natural building blocks have been studied with NMR spectroscopy. The block copolymer capsules made from protein and sugar components mimic the behaviour of cells and might be useful as microreactors or as drug-delivery agents.

Going cellular – An artificial cell made from molybdenum-based building blocks whose pores can open and close has been devised by an international team. The pores can allow molecules that are “too big” into the capsule.

Sensitive SERS beats ELISA – Scientists in South Korea have developed a new magnetic approach to immunoassay detection of important biological marker compounds and antigens using surface-enhanced Raman spectroscopy (SERS) of hollow gold nanospheres. The technique is not only much faster than standard assays but up to 1000 times more sensitive.

Promiscuous drug transporter – The multi-drug transporter P-glycoprotein (P-gp) detoxifies cells by promiscuously exporting chemically unrelated toxins and drugs. Now, X-ray crystallography has helped US scientists home in on the protein that also helps give cancer cells resistance to chemotherapy agents.

Six of the best from the latest SpectroscopyNOW.com

Dehydrated Water

hydridic-oxygen-subhydrateMeanwhile, I have been trawling the medical and scientific literature for more than two decades, hoping to spot a genuine medical panacea that might also be used to get greasy deposits off your kitchen surfaces.

Now, is the time to reveal what I’ve found Hydridic Oxygen(II) Subhydrate (HOS). This dessicated compound is astounding. It looks and behaves like Dihydrogen Monoxide but has none of the lethal effects.

The DHMO site explains that Dihydrogen Monoxide itself, although colourless and odourless, is in reality hydric acid, whichcontains the incredibly reactive hydroxyl radical. This chemical species can cause mutations in DNA, damage essential proteins, and even burst cell membranes. Moreover, it can alter the critical biochemistry of neurotransmitters in the brain. It is a common chemical found in soda even those without benzene, desserts, all kinds of meat, and countless beauty products. Indeed, DHMO is present in many cosmetics at much higher levels than even nanoparticles.

Hydridic Oxygen(II) Subhydrate, in contrast, has none of these properties. Indeed, whereas hydric acid has an astoundingly high specific heat capacity and expands on cooling below its freezing point, HOS has an infinitesimal heat capacity even at absolute zero and is not affected by temperature fluctuations.

It is in the world of medicine that HOS reveals its true character, by reacting this compound with hydronium hydroxide it is possible to produce a substance that exists in a fluxional redox state bound in the liquid phase by hydrogen bonds. This material has properties closely aligned with DHMO and can act as both detox preparation, hangover cure, and with the addition of ionic surfactants can even remove greasy deposits from kitchen surfaces.

Environmentalists may offer cautionary tales of the use of excess quantities of this material especially given that the redox form of HOS is present throughout our homes. However, it is possible to eradicate HOS from the domestic environment, with a substance best described as copious.

HOS could be a boon for travellers, as it has such a low density that it is essentially weightless, and only requires handling in an air-filled storage container, the gaseous contents of which can easily be displaced. Just add water.

Meanwhile, there is currently widespread discussion on the internet of products such as filtered, ionised alkaline water. The hype surrounding these super-water products claims how they are “better” than bottled water and have a more positive effect on your health and can even clean your drains.

According to dozens of sales sites, the filtering system for producing this special water could allow you to replace medicines and even household cleaning products. The so-called antioxidant properties of these special waters are so powerful they are even recommended by their supporters as the ultimate hangover cure.

Apparently, you can set the alkalinity/acid, the pH, to produce medicinal water, cleaning product or hangover cure as you see fit.

But, I’m afraid there’s nothing special about this supposedly uniquely filtered water that separates it from bog-standard tap water or even the priciest of spring-fresh mountain water. It’s H2O however you look at it.

For those on 2009-04-01 who assumed that hydridic oxygen(II) subhydrate was some new scary substance, check out the new title to this blog post and think again.

Copper Tone Alchemist

copper-alchemistSpring has sprung for the Alchemist, who, under the northern sun, takes on a marginal copper tone this week.

First up, a new copper catalyst that can take a sideways swipe at organic aromatic compounds and make them go all meta. We also have copper nanorods for 3D computer chips.

After two decades of trying, it seems buckyballs are to finally come of age with the development of these all-carbon soccerball molecules as drug delivery agents for novel multiple sclerosis (MS) drugs.

The Alchemist also learns from C&EN how chemical manufacturers and legislators alike are banning toxic ingredients from consumer plastics. In electrochemical news, researchers are using magnets to move microscopic particles, which they can then track through the fluctuations in the magnetic field.

Finally, if you didn’t already know, the launch of the journal Nature Chemistry apparently represents a new prospect for the chemistry community with added molecular bells and whistles that make print journals look a bit flat.

Get the full skinny in my Alchemist column on ChemWeb.com