Water of Life

A while back, I visited the Bushmills whiskey distillery (it was my second visit in as many decades) always a pleasure, especially the tasting panel at the end of the tour just before you spend all your money on, ahem, souvenirs.

Whisky is a broad category of distilled drinks made from fermented grain mash and aged in wooden casks. Different grains are used for different varieties, including barley, malted barley, rye, malted rye, wheat, and maize (corn), certainly a favourite at holiday time and the subject of many a New Year’s Resolution. The fermentation liquid is distilled, sometimes several times, to produce neat spirit, which is then aged in casks. Different barrels, virgin oak barrels, pine barrels, used sherry casks, charred barrels, are used to produce different flavours.

It’s quite ironic that there are some 200 to 300 chemicals in the finished product including carbonyl compounds, alcohols, carboxylic acids and their esters, nitrogen- and sulfur-containing compounds, tannins and other polyphenolic compounds, terpenes, and oxygen-containing heterocyclic compounds, and esters of fatty acids any one of which would probably be banned under health and safety rules if you were inventing whisky as a product today. Indeed, the nitrogen compounds include pyridines, picolines and pyrazines, carcinogens on the rocks, any one?

Anyway, one aspect of the whole process from grain to bottled liquor that fascinates me is that the distilled liquid, the spirit, is an almost pure ethanol-water mix (an azeotrope). In fact, the tourguide at Bushmills told us that this was so and that the flavour is then all to be found in the aging process in the barrel. But, if that’s so, then it doesn’t explain the wide range of flavours of whiskys matured in similar casks, nor does it explain how the peaty fireside phenols of some Scotch whiskys, the Islay type for instance, are carried into the bottle.

As is my current wont, I twurned to Twitter to ask about this and hooked up there with Michelle Jones of justaddbourbon.com who asked some of her friends in the bourbon trade about the spirit of the water of life, so we’ve got a Stateside answer.

“Look at it this way, distillation provides the palette by which aging can work its magic. There is no doubt that American Whiskey was once a very harsh tipple. Once aging was introduced, it mellowed the whiskey considerably. But even that doesn’t wholly answer the question. Aging contributes differently based on time. Short aging might contribute a little more sweetness whereas long aging contributes smokiness and oakiness. But most people pick out mintiness and a long finish from Heaven Hill whiskeys. That is a result of the distillation process.”

Whisky lactone (3-methyl-4-octanolide) is present in oak, which is the most commonly used barrel material and endows whiskies with an essence of coconut aroma, while the diketone diacetyl (2,3-butanedione) gives the buttery aroma of most spirits. Commercially charred oaks used for aging barrels are particularly rich in phenols, with some 40 different phenolic compounds, having been revealed in charred oak barrels, each one of which can add to the flavour. The coumarin scopoletin is also present in whisky.

Oh, and just in case you thought I was being inconsistent with the whiskey/whisky spelling, it’s impossible to know which one should be used whiskey is often for Irish and American, and whisky for Scotch and Canadian, but it’s Maker’s Mark Bourbon Whisky (original distillers were Scottish) and Woodford Reserve Bourbon Whiskey (waiting on an answer as to whether they have Irish origins), and they’re made just 80 miles apart in Kentucky.

Flu Structure, Mp3s, and Magnetic Minestrone

You can read my latest science news updates in spectroscopynow.com:

One flu over – X-ray studies have revealed details of the structure of a protein used by the avian influenza, H5N1, that allows it to hide its RNA from the infected host’s immune system. The structure could provide a new target for the development of antiviral drugs against this potentially lethal virus

Minestrone and magnetic resonance – Researchers in the US and France may have overturned decades of theory in magnetic resonance studies by spotting a discrepancy in the way nuclear spins behave. Their new mathematical model of the process improves our understanding of atomic behaviour and could lead to better NMR spectra, sharper magnetic resonance images, and perhaps one day a fully portable MRI machine.

Organic soil matters – Could the earth beneath our feet hold the key to climate change? According to scientists at the University of Toronto Scarborough their NMR results show that global warming is changing the molecular structure of organic matter in soil.

Battery capacity is full of holes – Researchers in Korea have developed a novel material for the anode in rechargeable batteries, which they say could make them much more efficient and extend significantly the length of time between charges.

And on ChemWeb for science news with a chemical element:

First on the list in this week’s Alchemist, more on the new anode material, which is potentially good news for the iPod generation. In analytical research, HPLC has been used to spot dummy tequila and in medical chemistry US radiologists suggest that a dose of modified vitamin D could protect citizens from a dirty bomb attack. Next up, a new approach to addressing qubits allows for faster measurements that could take us a step closer to a quantum computer, while Yorkshire chemists are working out the best mix of starting materials to get the maximum height yield on their tasty products. Finally, this week’s award is a record breaker in the State where big is everything.

Shedding Light on Neon Signs

neon-signAs regular readers know, I like to keep a fairly close eye on what Sciencebase visitors are searching for so that I can put together new posts that provide answers to the questions readers want answering. Recently, there has been a spate of search queries related to neon signs. Perhaps not the most exciting of subjects, but there is some nice chemistry to be learned from all the different colours available, so I thought I’d shed some light on the subject of noble gas illumination.

Incidentally, for those unaware of the history of noble gases, they were at one time known as inert gases because chemists thought their full outer shell of electrons made them unreactive. As more and more reactions for these so-called inert gases were discovered, it became necessary to abandon the “inert” label and focus on their nobility.

A neon light is not really much more than a fluorescent tube (actually, it’s less as it needs no phosphor coating on the inside), neon tubes contain the noble gas neon, surprise, surprise. Pass an electric discharge through a tube containing low pressure neon and it will glow with that familiar orange-red glow, so evocative of late-night bars and sleazy movies.

A neon light uses a very high voltage to propel an electric current through a low-density gas of neon atoms held in a glass tube. Charges from the electrode at each end of the tube fly through the gas colliding frequently with neon atoms and transferring some of their energy to the neon atoms. This kicks the neon atoms into a higher energy, excited state, with an electron in a higher orbital than normal. This excited state does not last and as the electron loses energy the atom drops back to a lower energy state and releases a photon of light. The energy of this photon is equivalent to the energy fall and for neon atoms that coincides with an energy that produces a reddish glow.

Many people, unfamiliar with the noble gas group of the periodic table – the p-block, assume that all coloured fluorescent tubes used in signage are neon signs. However, there are two ways to produce other colours – paint a standard mercury tube with the colour you want or far more effectively use a different noble gas in the tube instead of neon, perhaps together with mercury vapour to give a stronger glow. Here’s a break down of the discharge colours for each noble gas.

Helium (He) – Orangey white, usually
Neon (Ne) – Orange-red glow
Argon (Ar) – Violet, pale lavender blue
Krypton (Kr) – Grayish dim off-white
Xenon (Xe) – Blue-grey
Radon (Rn) – radioactive, not used in lighting

Of course, it is not only the noble gases and mercury vapour that can be added to lighting tubes. Nitrogen produces a slightly pinker glow than argon, oxygen glows violet-lavender but dimly. Hydrogen glows lavender at low currents, but pinkish magenta above 10 milliAmps, while carbon dioxide produces a slight bluish-white. Mercury can be made to glow in the ultraviolet, and is used in so-called black lights. Sodium vapour at low pressure glows the bright yellow of street lighting, particularly in England. And, even water vapour produces a glow similar to hydrogen, only dimmer .

Recycled Virgins, Nano, and Trigger Points

virgin-oilMy latest science news is now online in the spectroscopyNOW ezine. This week:

Recycled virgin – Recycled engine oil has high levels of organic impurities, heavy metals, and carcinogenic compounds, according to work carried out by researchers in Jordan. They have used atomic absorption (AA), inductive couple plasma (ICP) and Fourier transform infrared (FTIR) analyses to spot the differences between virgin and recycled engine oil.

In a spin over nanomaterials – Researchers at Rensselaer Polytechnic Institute, New York, are hoping to spread the word far and wide of a new analytical technique that can help scientists and technologists working with nanomaterials. They say that their discovery could help accelerate the development of materials for the next generation of solar energy conversion and computer data storage.

Deadly proteins and trigger points – US researchers have used NMR to identify a previously undetected trigger point on a naturally occurring “death protein” that helps the body get rid of damaged or diseased cells. The researchers suggest that their findings may offer a novel target for new drugs that could be used to treat cancer by forcing malignant cells to undergo apoptosis, or cellular suicide.

Finally, a rather technical item that will appeal to that specialist niche working on time-resolved laser-induced fluorescence spectroscopy. German researchers have found a new way to fit a statistical model to TRLFS spectra that could reveal hidden details and remove background noise, much more effectively than before. The method could allow samples containing various radioactive elements to be analysed effectively despite the interferences from the different ions present.

Polymer, Nanotech, Vitamins

This week the Alchemist hears how polymer chemists are turning to supramolecular chemistry (or is it supramolecular chemists turning to polymers?) to create novel flexible and elastic materials. In nanotechnology, a British consumer activist organization is calling for more safety data on nano materials used in cosmetics, and French scientists have demonstrated how nitrogen oxides released by snow melt in the Arctic could have a global impact.

In biological research, US scientists are suggesting that a specific active form of vitamin D could be useful as a protective agent against nuclear incidents. And, in interplanetary chemistry, Johns Hopkins researchers have found spectroscopic evidence that water-bearing opal formed on Mars much more recently than previously thought.

Finally, we’re going Dutch with this week’s award in which technology transfer in the area of solar energy conversion brings a financial reward and prestige to a graduate student and his colleagues. Get the full skinny and the links in current issue of The Alchemist

Election Special

barack-obamaCongratulations to Barack Obama and well done America, you should feel proud to voted for your 44th President in Barack Obama. But, now that’s done and dusted on with the real news:

In Issue 100 of the relaunched ChemWeb Alchemist, we report on energy is top of the agenda with a record-breaking solar cell material from Australia. New insights into the ripening of bananas reveals they get the blues while crystallography has been thrown a curveball as scientists discover the active sites in many models of protein receptors are not what they seemed to be. The chemistry of alternative medicine sits toxically under the glare of the Alchemist’s lamp and revelations about yet another small molecule with a crucial role to play in cellular control. Finally, a double ACS award for research on the structure and reactivity of molecular oxygen binding to copper and iron complexes, which could have future energy applications.

In SpectroscopyNOW this week, rather than designing and building new instrumentation from bespoke components, researchers in Canada have turned to the laser-based optical read-write technology of DVD and CD players to create a biomedical diagnostics system that requires no hardware modifications. Hua-Zhong “Hogan” Yu and his colleagues Yunchao Li, Lily M. L. Ou in the Department of Chemistry, at Simon Fraser University, in Burnaby, British Columbia, Canada, are all for recycling. They have now developed a digital signal readout protocol for screening disc-based bioassays that uses a standard optical drive (CD/DVD) from an ordinary desktop computer.

blue-bananasAlso, this week “Yes, we have blue bananas!” – Forget the so-called morning banana diet, blue is the new yellow and researchers in Europe and the US have no intention of slipping up when it comes to explaining why ripened bananas glow blue under ultraviolet light.

A gold star for SERS – Scientists at the National Institute of Standards and Technology (NIST) in Gaithersburg, Maryland, are using surface-enhanced Raman spectroscopy (SERS) to test the properties of star-shaped gold nanoparticles. They have found that these particles have optical qualities that outshine the competition and could make them useful in chemical and biological sensing and imaging.

Athletic support – Researchers have used NMR to show that endurance-trained athletes have a higher resting muscle metabolism than couch potatoes. The work suggests that the dissociation of oxidation and adenosine triphosphate (ATP) production could be another route by which exercise improves insulin sensitivity and burns excess energy and may have implications for understanding the development of type 2 diabetes.

Crystals foxed – Obtaining a high-resolution crystal structure of a protein, a receptor or an enzyme, for instance, has been at the forefront of the drug design field for many years. Finding small molecules that will dock with the active site of the protein and either stimulate it or inhibit it is the basis on which many pharmaceutical products were built and are thought to work. But, what if that fundamental concept were wrong? This is the sobering and at the same time very important conclusion made by researchers at Leiden University in The Netherlands and the Scripps Institute, La Jolla, California

Halloween Skeletons and Reactive Chemistry

A jack-o'-lanternIn the latest scary issue of the chemistry news webzine, Reactive Reports: Dating skeletons, sticky feet for Gecko Guy, volcanic chemistry from the depths of Hades, and chasing mad cows.

CSI: Waco – A statistical method that processes spectroscopic measurements very quickly could allow crime scene investigators to determine time of death of skeletal remains more accurately and quicker than before, according to researchers at Baylor University in Waco, Texas.

Stuck On You – Scientists have long been interested in the ability of gecko lizards to scurry up walls and cling to ceilings by their toes. Now, researchers have found a way to mimic those hairy gecko feet using polymers or carbon nanotubes.

Tubular Reactions – Using surface-modified carbon nanotubes to activate an important industrial chemical, butane, without the need for an expensive metal catalyst–Dang Sheng Su and his team present a process that offers a cheaper alternative to the current industrial process for butane activation.

Chasing Down Mad Cows – Researchers in Europe have tracked down the molecular anchor that hooks errant and infectious prions leading to mad cow disease, scrapie in sheep, and Creutzfeldt-Jakob disease in humans.

Explosive News

In my SpectroscopyNOW.com column this week: US researchers have used NMR to help them develop a new high explosive material that can be melt cast into a charge with any shape (and presumably whose explosions could be monitored by the blast-proof thermometer).

Nanotubes and geckos caught the eye of The Alchemist this week as US chemists describe a way to out-gecko the gecko by developing a new material that simulates the animal’s hairy feet but is ten times as sticky. Adhering with the theme of sticking, European researchers have found a way to tether prions to a model cell membrane that could open up new research into diseases such as Creutzfeldt-Jakob, BSE and scrapie.

explosive-newsIn environmental news, recent insights into dust from the Sahara could improve our understanding of climate change. Finally, dust of another kind is being used in an entirely different way, by British researchers to protect a new type of thermometer used to measure the 3000 Kelvin temperatures of an explosion.

The crystal structure of a cancer-killing virus has been revealed. The 3D structure of the recently discovered Seneca Valley Virus-001 shows that it is unlike any other known member of the Picornaviridae viral family (which includes the common cold viruses), and confirms its recent designation as a separate genus “Senecavirus”.

Morbid tales for Waco CSI reveals how cheminformatics forensic scientists might use spectroscopy on skeletal remains to determine post-mortem interval, how long the corpse has been dead, in other words.

Under the Spotlight, over on Intute:

Oily fungus helps reduce acid rain – Researchers in Iran have discovered a fungus that can metabolise and absorb sulfur from crude oil and so reduce one of the major sources of air pollution when petroleum products are burned…

Radio samples – More than 20 years after Chernobyl, US researchers have travelled to Sweden and Poland to gain insight into how radioactive elements spewed out by the reactor fire have undergone “downward migration” into the soil…

The dark energy illusion – What if Copernicus were wrong and the earth actually has a special place in the universe? Not some metaphysical, philosophical, supernatural special place, but just special in that the local environment is not the same as other local environments across the reaches of space?

Anti Cocaine, Heroin Test, and Excited Brains

heroin-userThe latest issue of my SpectroscopyNOW column is now online. In this issue, having sampled a little cannabis chemistry last month, I turned to cocaine, and enzymes to beat addiction, and new techniques for testing the purity, or otherwise of street heroin.

Anti cocaine – A mutant enzyme that breaks down cocaine in the bloodstream 2000 times faster than the body’s natural enzymes could lead to a rapid-response treatment for acute overdose or lead to a new therapeutic approach to treating drug addiction.

Testing times for street heroin – Impure forms of illicit drugs are almost as big a problem as the drugs themselves. Now, researchers in Spain have used diffuse reflectance near-infrared spectroscopy (DR-NIR) to quickly determine the purity of heroin.

Sooty balloons – Nothing more sophisticated than a lump of graphite, a roll of sticky tape, and a wafer thin sliver of silica are needed to inflate ideas about nanochemistry. Raman spectroscopy and other techniques have been used to reveal the details of the DIY construction of a balloon-like membrane of graphene.

Stellar chemistry – Astroscientists are using various spectroscopic techniques to root out relatively complex molecules lurking in the interstellar medium. The complexity of naphthalene, discovered in space, and corannulene, could provide new evidence of a cosmic origin for the precursor molecules of life on Earth

Analytical compromise reveals protein folding secrets – A new X-ray technique, time-resolved wide-angle X-ray scattering (TR-WAXS) could defeat even high-field NMR spectroscopy in allowing researchers to monitor very fast, nanosecond-scale movements in the context of the overall three-dimensional protein structure.

Finally, this week, functional magnetic resonance imaging (fMRI) has revealed a reason why the excitement of unwrapping presents dwindles as our brains get older and more jaded. According to a new study, a biochemical pathway is responsible for mellowing our expectations. I cannot say I’ve noticed to be honest, I still get just as excited as the kids at Christmas unwrapping presents…although I’ve moved on from playing with the packaging now, most times.

To effectively reverse any harmful heroin addiction, a patient must undergo detoxification and treatment.

Nobel Prize for Chemistry 2008

The Nobel Prize for Chemistry 2008 was awarded to Osamu Shimomura (b. 1928) of the Marine Biological Laboratory (MBL), at Woods Hole, Massachusetts and Boston University Medical School, Martin Chalfie (b. 1947) of Columbia University, New York, and Roger Tsien (b. 1952) of the University of California, San Diego, La Jolla, “for the discovery (1962 by Shimomura) and development of the green fluorescent protein, GFP”. Important, of course, and congratulations to all three…but I just knew it would be bio again!

The Nobel org press release for the Chemistry Prize can be found here.

The remarkable brightly glowing green fluorescent protein, GFP, was first observed in the beautiful jellyfish, Aequorea victoria in 1962. Since then, this protein has become one of the most important tools used in contemporary bioscience. With the aid of GFP, researchers have developed ways to watch processes that were previously invisible, such as the development of nerve cells in the brain or how cancer cells spread. Of course, the things that the public know about GFP are the green-glowing mice and pigs that have hit the tabloid headlines over the years.

I’ve written about green fluorescent proteins (although not green fluorescent proteins) on several occasions over the years. Briefly in an item on artificial cells in December 2004. In Reactive Reports in September 2005. In New Scientist (“Genetic Weeding and Feeding for Tobacco Plants”, Jan. 4, 1992, p. 11). In SpectroscopyNOW in January 2008. And, more substantially, in American Scientist (January 1996) on the use of a green-glowing jellyfish protein to create a night-time warning signal for crop farmers. Plants under stress would activate their GFP genes and start glowing, revealing which areas of which fields were affected by disease or pests and so tell the farmer where to spray. Of course, the idea of green-glowing cereals would have any tabloid headline writer spluttering into their cornflakes of a morning.

As I said earlier in the week, on the post for the Nobel Prize for Medicine 2008 and on the Nobel Prize for Physics announcement yesterday, the Nobel press team has employed various social media gizmos to disseminate the news faster than ever before, including SMS, RSS, widgets (see left), and twitter.

You can check back here later in the week and next week for the Literature, Economics, and Peace Prizes, the widget at the top left of this post will provide the details as soon as they are released. It’s almost as exciting as sniping your bids on eBay.