Spectral Alchemist

spectral-alchemistThis week, it’s my The Alchemist chemistry news column that coincides with SpectroscopyNOW updates:

The Alchemist this week catches site through his spyglass of complex interstellar molecules with a hint of raspberry and rum, and a possible way to capture carbon usefully that doesn’t require huge energy input. Geordie scientists have discovered why a breakfast fry-up could be the optimal hangover cure, a NIST team has found a way to suppress quantum errors, and flexible concrete that heals itself has been made by US materials scientists. Finally, the publicity department at the Royal Society of Chemistry could strike gold in a major PR awards thanks to its Italian Job.

Recycling carbon dioxide – A research team in Singapore has developed an alternative to simply burying carbon dioxide captured from sources such as coal-fired power stations. Their experiments used NMR spectroscopy to track the catalytic conversion of carbon dioxide into methanol under very mild reaction conditions. (Personally, I think these kinds of efforts will never likely balance the energy/resources books and will always come out costing more than they save in terms of emissions and fuel, but an interesting reaction, nevertheless).

ELISA, meet SERRS – Surface-enhanced resonance Raman scattering could be used to quickly spot the telltale signs of prostate cancer at the molecular level, according to a British team. This is the first use of a well-known ELISA colorimetric substrate as a SERRS marker.

Polymerising phosphates – X-ray crystallography has been used to identify a novel enzyme that polymerises the essential biochemical building block phosphate in eukaryotes, which include all animals, plants, fungi, and protists. The proof of principle was obtained with yeast and could pave the way to the discovery of related enzymes in other species.

Raspberries and ultraviolet skin damage – There’s no connection between the interstellar molecules mentioned earlier that just happen to taste of raspberries and this news item about how ellagic acid found in lots of different types of fruit and vegetables can protect skin cells from the aging effects of UV-B. Other, of course, than the fruity headlines the research makes possible.

Researchers in Korea have demonstrated that the topical application of antioxidant ellagic acid, which is found in certain fruits and berries, can protect against damage to the skin caused by incident ultraviolet-B radiation. Their work suggests that the compound could help protect people to some extent from the skin-aging effects of the sun.

Avoiding scanners – Efforts should be made to avoid unnecessary patient exposure to imaging devices that use ionising radiation, according to a warning from the International Atomic Energy Agency. The Agency suggests that MRI and ultrasound should therefore be more widely used instead of X-ray based imaging.

Arsenic, Aminos, X-ray, Teasing

A chemistI was offline with my family last week, walking and drinking ale in Derbyshire, so I’m a bit late in alerting you to my latest news stories on SpectroscopyNOW, they went live in my absence. So here’s the catchup:

Tyson’s toxic technique – The first accurate test for arsenic compounds in contaminated soil has been developed by US chemists. Their atomic emission approach to the problem could provide improved environmental and health assessments of contaminated sites.

Cosmic X-rays – Dutch have astronomers have, for the first time, used X-ray spectroscopy to reveal the long-sought signatures of dust in the interstellar medium, the extended X-ray absorption fine structure (EXAFS).

ET’s aminos – One of biology’s unanswered questions involves the evolution of the genetic code and the fact it uses just 20 natural amino acids as its building blocks for making proteins. A mathematical analysis of biochemistry by researchers in Canada suggests a possible answer that could have profound implications for our search for life on other planets.

Teasing with a stripline – A high-resolution NMR flow probe for microfluidic systems based on a new type of stripline detector chip has been developed by researchers in The Netherlands. The tool could be useful in direct monitoring of chemical reactions performed in so-called lab-on-a-chip devices.

Bond, Q, and Controlled Cleavage

bond-q-cleavageBond, Q, and controlled cleavage – US chemists have made an iron catalyst that can be used to rapidly break strong carbon-hydrogen bonds within molecules, up to one thousands times faster than other methods. The research could solve one of the great chemical challenges.

Depressing brain scans – The first study of its kind has used MRI to demonstrate how changes in cortical thickness may surprisingly relate brain structure to clinical depression. The large-scale US study suggests that a thinning of the right hemisphere of the brain could be a risk factor for depression.

Naturally synthetic capsules – Synthetic capsules made from natural building blocks have been studied with NMR spectroscopy. The block copolymer capsules made from protein and sugar components mimic the behaviour of cells and might be useful as microreactors or as drug-delivery agents.

Going cellular – An artificial cell made from molybdenum-based building blocks whose pores can open and close has been devised by an international team. The pores can allow molecules that are “too big” into the capsule.

Sensitive SERS beats ELISA – Scientists in South Korea have developed a new magnetic approach to immunoassay detection of important biological marker compounds and antigens using surface-enhanced Raman spectroscopy (SERS) of hollow gold nanospheres. The technique is not only much faster than standard assays but up to 1000 times more sensitive.

Promiscuous drug transporter – The multi-drug transporter P-glycoprotein (P-gp) detoxifies cells by promiscuously exporting chemically unrelated toxins and drugs. Now, X-ray crystallography has helped US scientists home in on the protein that also helps give cancer cells resistance to chemotherapy agents.

Six of the best from the latest SpectroscopyNOW.com

The Spicy Disciplinarian

turmeric-spicesFour more fascinating research discoveries feature in my column on SpectroscopyNOW this week, covering research into the medicinal effects of curry powder, cyst analysis, why nicotine does not kill instantly, and bristling nano balls.

The spicy disciplinarian – Solid state NMR has been used to explain why curcumin, one of the physiologically active components of the yellow spice turmeric has wound healing and other medicinal properties.

Atomic cyst assistance – Researchers in Turkey are using atomic absorption spectroscopy to analyse the levels metal ions and phosphorus in samples of fluid from breast cyst. They have observed a marked difference between the ratios of ions in the two main types of cyst one of which is more closely associated with the development of breast cancer.

Nicotine’s smoking gun – Years of structural work and wider studies have finally culminated in an explanation for nicotine’s overwhelming affinity for brain receptors and the addictive molecule’s almost total disregard for the nicotine receptors found in muscle tissues.

Bristling nano balls – A mathematical analysis of inorganic nanoparticles explains why they form complex structures with a layer of hydrophilic polymer chains.

Wireless Probing, Shiny Bugs, Remote Scanning

brain-probeProbing the brain wirelessly – IR-absorbing lead selenide particles form the basis of a method for the study of neuronal activation in samples of brain tissues without the need for hard-wired electrodes. The technique instead utilises light-triggered nanostructured semiconductor photoelectrodes to probe activity.

Propagation improves MRI, allows remote scanning – Swiss researchers have succeeded in exciting and imaging nuclear magnetic resonance in the human body in a way that could represent a paradigm shift for imaging.

Plug and play molecular logic – A “plug and play” approach to building molecular logic units has been developed by chemists in the UK and Thailand. The team used various spectroscopic techniques, including fluorescence and NMR to monitor their logical constructions.

White light microscope – Silver nanoparticles that can generate white light could improve microscopy in research into cancer and bone diseases according to a paper in the March issue of Nano Letters.

Crystal structure not to be sneezed at – Researchers have obtained the X-ray crystal structure of a monoclonal antibody (mAb) bound to the lethal H5N1 strain of avian influenza virus A. The structure reveals that the heavy chain of the mAb inserts into a highly conserved pocket in the of the haemagglutinin protein stem.

Sperm assessment – Raman spectroscopy could enable fertility researchers and IVF clinicians to assess individual sperm. The process involves capturing an individual sperm cell between two highly focused beams of laser light with Raman pinning down features of the trapped wriggler’s DNA.

Whatever Happened to SARS?

sars-epidemicIn 2004, I did some reportage for the Royal Society from their meeting on emerging viral infections. The meeting was held just after the worldwide SARS outbreak that threw nations into chaos and had the more susceptible parts of the media hyping the end of the world. Of course, SARS, an emerging pathogen, was lethal and had devastating effects on thousands of people.

Ultimately, the first SARS outbreak was controlled, and a subsequent epidemic is yet to emerge. Severe acute respiratory syndrome, the disease caused by a highly infectious RNA coronavirus, remains in waiting. SARS is still an issue, it can, when required, undergo frequent mutations, which adds unpredictability to a future outbreak. There is no vaccine, assay, or treatment yet. Health officials can only resort to isolation and quarantine to control its spread.

In the meantime, scare stories surrounding the potential for avian influenza H5N1 have filled many column inches and web estate since that strain was first identified. We are, obviously, yet to succumb to an epidemic of global proportions of an evolved strain of H5N1 that could be transmitted person to person.

“At the peak of the worldwide SARS epidemic, apprehension arose out of partially disclosed, if not concealed, information on the current status,” says Yi-Chun Lin, at the Central Police University, in Taoyuan, Taiwan ROC. This he says led to many foreign companies to withdraw their business from Taiwan or move their bases elsewhere. At the time of the crisis, normal trading, investment and travel were suspended or came to a standstill. Some regions are yet to make a complete recovery from SARS and the advent of H5N1 in South Asia as well as the potential for the emergence of yet another virus or other pathogen has many investors wary of the region.

Lin suggests that proposals to be acted on in an emergency to help contain an emerging crisis, without obfuscation, ought to be put in place. This would allow foreign investors to undertake risk control assessment for this part of the world, ignore the scare-mongering, and be assured that whatever the next disease to emerge may be it will not have the shocking and devastating effects it otherwise would.

SARS dramatically illustrated the wide-ranging impact that a new disease can have in a closely interconnected and highly mobile world,” Lin says, “The public anxiety it incited spread faster than the virus, causing social unease and economic losses.” The suddenness of the outbreak provided a critical test of medical systems, infection control policies, and tested many national disease response and crisis management abilities.

In a subsequent disease crisis, human lives will be at risk and economic stability [for what that is worth at the moment!] thrown into jeopardy. “It is thus important to learn from experience and enhance preparedness for future,” adds Lin.

Research Blogging IconYi-Chun Lin (2009). Impact of the spread of infectious disease on economic development: a study in risk management Int. J. Risk Assess. Manage., 11 (3/4), 209-218

Alchemy, Spectroscopy, and the Hash

magnetic drug deliveryIn the latest ezines from SpectroscopyNOW:

Magnetic drug delivery for Alzheimer’s disease – Tiny pieces of magnetite incorporated into chitosan microparticles could act as efficient drug-delivery agents for the Alzheimer’s drug tacrine. Tacrine has notoriously low oral bioavailability and unclear efficacy but this delivery approach boosts uptake.

Contrasting tumours – US scientists have successfully predicted the outcome on breast tumours in a pre-clinical study of a so-called nano drug. Their research could help determine which patients will respond best to these and other drugs.

Long-distance protein – The behaviour of dynein, a relatively little-studied protein found in muscle has been characterised using fluorescent markers and electron microscopy, paving the way for X-ray diffraction and NMR spectroscopy studies.

Farming phosphorus – Phosphorus NMR can help distinguish between the nature of organic and non-organic farming and provide clues about how phosphorus from both sources affects waterways and coasts.

Under February’s Spotlight over on Intute I reported on:

Ocean-going stalks fight global warming – Burying crop residues at sea may help reduce global warming, according to researchers in the USA. They suggest that transporting millions of tonnes of bailed up cornstalks, wheat straw, and other crop residues from farms, and burying it in the deep ocean.

Testing times for chameleon chromium – A new standard for chemical testing has been developed for a carcinogenic chromium salt. The hexavalent chromium ion was at the heart of the pollution controversy on which the movie Erin Brokovich was based.

Musing on supermassive black holes – New observations from a collection of powerful telescopes have allowed astronomers from Germany and the US to settle a paradox regarding the behaviour of merging elliptical galaxies. The team has revealed evidence that the largest, , most massive galaxies in the universe and the supermassive black holes at their cores grow together rather than one leading to the other, which explains the “fluffy” nature of their central regions.

Alchemist news this week – We hear how tubular soot, better known as carbon nanotubes, might displace costly platinum in future fuel cells and so herald a new era in power supply. In physical chemistry new insights could explain why molten glass solidifies but retains the structure of a liquid and in biochemistry a new approach to producing glycoproteins could bring some regularity to biomedical research into these substances.

Also, under the Alchemist’s gaze: In troubled times, airport security is high on the agenda and a new detector system for spotting secreted liquid explosives is emerging from the prototype stage. Finally, carbon dioxide is not all bad, research into its effects on wound healing has led to a significant prize for British scientists.

Speaking of alchemists watch out for my “Science and Islam” with embedded video this Friday, you can call me Al.

Oh, the hash? Well…strongest link would have to be #science, but I just want to reference The Pogues in a very abstruse way.

Science News Updates

date-rape-analysisMy latest science news updates are now available on SpectroscopyNOW.com and ChemWeb.com, covering a wide range topics from date rape drug analysis to DNA that behaves parasitically and could underpin speciation and evolution:

Date rape analysis – Raman spectroscopy can be used to identify the date rape drug GHB and its precursor GBL in spiked drinks even if they’re in different types of drink or containers included coloured glass, plastic beakers, and polythene sample bags.

Parasitic genetic mobility – A stretch of DNA behaves like a parasite in the genome causes health problems but could explain certain aspects of evolution and speciation. The crystal structure of its protein reveals much about our ancient past and our possible futures

Nano MRI – Researchers at IBM working with a team at Stanford University have demonstrated MRI with a volume resolution 100 million times better than possible conventional systems. The technology could herald single-cell MRI and even allow protein interactions to be imaged clearly.

Getting inside bacteria with spectroscopy – Solid-state spectroscopy has been used for the first time to investigate large membrane proteins in bacteria, allowing researchers to investigate exactly how the sensory organs of these single-celled organisms function.

Ammonia caught on film – A sensor based on a composite plastic that conducts electricity (related to the materials used in OLED displays) can detect the poisonous gas ammonia very selectively and be ready to use again within seconds, unlike similar devices.

Taking the lead – Magnetic nanoparticles that can soak up lead from aqueous solutions, or even a blood sample, might be used to treat lead poisoning, but could have more immediate applications in diagnostics, biomedical research and environmental science.

The Alchemist discovers how to improve analytical chemistry by keeping things cool, how to improve anticancer therapy by lowering the dose and increasing frequency, and how to reduce lime scale in hot water appliances. Also this week a fall in air pollution has improved the life expectancy of Americans, melamine sentences have been passed in China, and pioneering global warming research earns geochemist Wallace Broecker one of the biggest cash prizes in science.

Autism Saliva Test

autismI recently reported on the spit test being developed for autism spectrum disorder (ASD). It’s in the very early stages of development (this is not an antenatal test), but the details were certainly of interest to the target audience on the SpecNOW site.

Of course, the mainstream media picked up on the news of the possibility of such a simple test for autism too and the publication also coincided with literary revelations about Paul Dirac, the twentieth century physicist often labelled the British Einstein, and a debate in The Guardian newspaper concerning the possibility of antenatal testing and independent research by Cambridge University’s Simon Baron-Cohen. Although Baron-Cohen’s work is not looking for an antenatal test for autism, it has certainly led to a call for a public debate on the ethics of such a test.

Obviously, in the course of writing my SpecNOW item I contacted Massimo Castagnola of the Università Cattolica in Rome, Italy, whose team is behind the saliva test and asked him about its potential.

“The analysis of saliva, at least at the moment of the research, cannot detect a subject with autism spectrum disorder (ASD),” he told me, “Diagnosis of ASD is always a task of complex neuropsychiatric tests, made by a specialist in infant neuropsychiatry.” Indeed, Baron-Cohen is on record as saying: “Autistic traits are also normal – it is just a matter of how many of these you have.”

Castagnola explained how his team had discovered that a specific modification of salivary peptides (known as hypo-phosphorylation) is present in the saliva of a small subgroup of ASD patients. Nevertheless, the presence of these abnormal peptides, which suggest a biochemical history of failed protein activation in the patients has high statistical significance).

He pointed out that, “The analysis of a larger group of patients and controls will be necessary in order to confirm the results. Interestingly, low levels of phosphorylation of salivary peptides were observed by us in a previous study performed on saliva of pre-term newborns.”

Phosphorylation, a metabolic process that activates many proteins is under the control of an enzyme known as Golgi-casein kinase. This is a pleiotropic enzyme, which is expressed in several tissues other than salivary glands, including the brain.

“Our hypothesis is that the observed hypo-phosphorylation could be connected to a defect of the kinase, and the defect could reflect not only in hypo-phosphorylation of salivary peptides [which has no effects on the mouth], but also in the hypo-phosphorylation of proteins involved in brain development either during foetal growth or in the first months of life. This is a clue for the molecular basis of disease, at least for a subgroup of patients,” Castagnola told me.

Importantly, hypo-phosphorylation of salivary peptides is not necessarily indicative of ASD, as I mention in my SpecNOW article. Only 18 out of 27 had this characteristic of their salivary peptides. But, hypo-phosphorylation might be present because of another medical problem that may have neurological and/or multifactorial origin.

“Diagnosis of ASD is complex, and ASD is almost certainly a multi-factorial disease,” Castagnola adds, “It would be important to have an early biochemical marker, able to discriminate between different groups of ASD patients.”

There are, however, no practical therapeutic consequences of the Italian research at the moment. “If future research provides further information, we hope that salivary analysis could be useful in order to address a subgroup of ASD patients toward specific therapies,” Castagnola says. “In principle, the non-invasiveness of the test should allow its wide use.”

However, even if such a test were demonstrated to have clinical efficacy, there is currently no therapy that could be applied to follow up detection of salivary hypo-phosphorylation state. Perhaps also of concern is that some ASD patients tend not to be cooperative, have a delicate neuropsychiatric asset, and using the test could disturb the patient. “The test, at least at the moment, should be performed only in very specialistic centres that would go in deep on the molecular basis of the disease,” adds Castagnola.

In the Guardian discussion, which is not related directly to the saliva test work, piece, Michael Fitzpatrick suggests that worrying about antenatal testing is premature, because there are dangerous procedures being performed on children now. Apparently, the anti-vaccine lobby and others claim that autism in boys is associated with premature puberty and with toxic levels of mercury, from vaccines and environmental pollution (Baron-Cohen’s research has not yet proven a connection between exposure to high levels of testosterone during foetal development). These testosterone and toxic metal theories have led to the emergence of some very dangerous quackery including chelation therapy to remove heavy metals from the body (of course chelates will also mop up vital trace elements too) and the use of testosterone inhibitors. The claims of at least one advocate, Mark Geier, have been dismissed as intellectually dishonest in a 2006, court case, reports Fitzpatrick.

Indeed, Baron-Cohen has written to The Guardian in an effort to rebalance what he sees as problems with the reporting in The Guardian of his research. His study, published in the British Journal of Psychiatry was not, he says, about prenatal screening for autism, and indeed did not test children with autism. “The aim of the study was simply to understand the basic mechanisms causing individual differences in autistic traits in an otherwise typical sample,” he says. But, maybe he protests too much, the BPS press release quotes him as saying such a test would require thousands not hundreds of subjects and then adds, “Our ongoing collaboration with the Biobank in Denmark will enable us to test that link in the future.” So it certainly looks like his team is working towards an antenatal test for autism.

Moreover, a BBC article by Baron-Cohen published before The Guardian reports and discussion certainly makes that clear. From his introduction: “The prospect of a prenatal test for autism, allowing couples to choose whether to have a baby with the condition, is coming closer. And with it also comes the possibility of a prenatal drug treatment being developed.” In that article Baron-Cohen warns that “caution is needed to ensure associated talents, like numerical abilities, are not lost if the test or a ‘cure’ become available.”

Research Blogging IconMassimo Castagnola, Irene Messana, Rosanna Inzitari, Chiara Fanali, Tiziana Cabras, Alessandra Morelli, Anna Maria Pecoraro, Giovanni Neri, Maria Giulia Torrioli, Fiorella Gurrieri (2008). Hypo-Phosphorylation of Salivary Peptidome as a Clue to the Molecular Pathogenesis of Autism Spectrum Disorders Journal of Proteome Research, 7 (12), 5327-5332 DOI: 10.1021/pr8004088

Full Metal Alchemist

Full Metal AlchemistFirst story to fall under the gaze of The Alchemist this week is synthetic HDL, a potential alternative therapy for cholesterol problems wrought through gold nanotechnology. Next, we hear of atomic ink that avoids the push and shove of microscopic manipulation by introducing the metallic nano swap meet.

Bed bugs, are apparently evolving resistance to second-generation pesticides, an international team has revealed the channel-swapping mechanism, which could help chemists design alternatives. Mass spectrometry of salivary secretions, surprisingly enough, may one day offer a chemical test for autism spectrum disorders (ASD) while functional magnetic resonance imaging (fMRI) is revealing how the female brain responds to the odour of male sweat. Oh, okay confession it wasn’t full metal.

Meanwhile, in additional news in my SpectroscopyNOW column:

Wine, rum and lead – Sailors and wine buffs beware. A novel method for the direct determination of lead in rum and wine could reveal their favourite tipple to be contaminated with potentially harmful quantities of the toxic heavy metal. The technique uses a flow injection hydride generation system coupled to an atomic absorption spectrometer with flame-quartz atomizer (FI-HG-AAS).

Bilious NMR – High-field NMR spectroscopy has been used for the first time to analyse human liver bile, as opposed to gall bladder bile, with a view to improving liver transplant success. I discussed this SpecNOW post in more detail on Sciencebase.

Drugs get heavy – Deuterated, “heavy”, pyridine adopts a different crystalline form from that of pyridine with a natural distribution of isotopes. The effect might be exploited in creating novel, more effective, versions of pharmaceutical products, according to researchers in Germany, as well as opening up studies into crystal morphology.