Clams on Prozac

The sex connection with oysters (I don’t mean sex with them, obviously, but that they’re supposed to be an aphrodisiac) is obvious but what about clams on Prozac?

A US biologist claimed to have discovered that the anti-depressant can help improve the sex lives of shellfish. According to Peter Fong of Gettysberg College he found that the drug stimulates freshwater fingernail clams and zebra mussels to spawn, which could be useful for clam and mussel farmers. A clue as to why lies in the effects of Prozac on raising serotonin levels – the compound not only affects human mental happiness but is the trigger for spawning in these creatures.

Fong added mysteriously that rarely has either animal been observed to spawn in the wild or in the laboratory without the use of an artificial chemical aid. I was puzzled then as to how these aquatic creatures managed to reproduce successfully for millions of years before the invention of Prozac.

Guilty privates

There’s an army barracks attached to a local village that allows the public to use its heated outdoor swimming pool in the summer. I often assumed it was too much chlorine that was the problem with stinging eyes.

But, according to chemist Howard Gosling that typical swimming pool smell actually comes from compounds known as chloramines that form when chlorine reacts with any urine or sweat in the water. Nice. It’s the chloramines not the chlorine that make your eyes sting.

I’ll leave you to draw your own conclusions about why the army pool brings tears to the eyes. Maybe the CO should drop in some of that chemical that turns the water blue of there are any guilty privates swimming.

Illicit CD-ROMs

An Australian chemist friend of mine was giving a lecture recently on how Western chemists might best help their colleagues in the developing world gain access to the mountains of chemical information available without eating into their own budgets too much.

Various systems based around the Web were discussed but industrial delegates were surprisingly more than a little interested in one particular idea concerning CD-ROMs.

My chemist friend planned to set up a cheap subscription service for a monthly CD-ROM that would mirror chemistry sites on the web and so bring the internet to those scientists in poverty-struck institutes with no access. When the queue for samples of the CD-ROM had stretched to the back of the lecture hall my friend asked the next person in line why they were so keen to see the CD-ROM. The startling reply was that their employer was so scared of staff wasting time on the web that all net access was blocked – a CD-ROM could be viewed illicitly without needing a net connection.

Where there’s muck, there’s brass

Where’s there’s muck there truly is brass according to the late Benjamin Luberoff writing in Chemistry & Industry. Luberoff reported that in Sacramento, California, someone is stealing the trash. Not just any old rubbish, mind, the stuff that’s getting the attention of the local criminal fraternity, or sorority, is the tonnes of recyclables residents kindly sort and leave out for collection every week.

It’s easy to load a pickup truck with aluminium Coors cans, paper and glass, drive to the local recycling plant and pick up a few nickels and dimes in return for one’s efforts, he reckons. The local police department estimates that some $400,000 worth of recyclables are being scavenged from among the garbage of the citizenry each year.

A sizeable loss to the city coffers to add to the $250,000 they spend on disposal of old fridges and tyres. I’m waiting with interest to see the same happening in Cambridge where a kerb-side recycling scheme was implemented last year. If it’s good enough for California.

Stick with grubby bedsheets

My Dad is a retired civil engineer and unfortunately for him recently suffered a severe and itchy allergic rash on his legs caused by exposure to a biological washing powder.

After trying a topical antihistamine cream Dad went to his GP who prescribed antibiotics then, as a last resort, a steroid cream known as Betnovate-C.

According to the information leaflet accompanying the tube of cream it ‘may stain hair, skin, or fabric’. So, what’s it doing to your skin, my Dad wondered.

That aside, after a successful treatment, he was a bit puzzled as to how wash out a particularly stubborn mark on the bedsheets. His mind was put at rest by the instructions on the cream’s leaflet – ‘stains may be removed with a biological washing powder,’ it said.

Of course.

Elemental Discoveries

Elemental Discoveries was first published as a spread of chemistry news items written by David Bradley in the mid-1990s for the young chemists magazine New Elements (the name for which, incidentally, DB came up with). In 1996, he began hosting it on the web and by 1999 that proto-blog had morphed into the Sciencebase site, which ultimately became the Sciencebase Science Blog.

If you follow through the Sciencebase archives you may notice gaps, there are legacy pages that are not part of the main content management system (CMS), unfortunately, and so old, and perhaps out of date now, that it would be pointless to fold them into the CMS.

Issue 49

The visible way

The efficient conversion of sunlight to chemical energy has generally been the preserve of photosynthesising life. Until now.

Stellar system stifles landfill stench

Anyone living near a landfill will be familiar with the awful smell of decomposing waste. But, those nasty niffs could soon be history, thanks to British researchers who are tearing the odour molecules apart with a plasma.

A closed view of life

In the growing field of research into biospheres, scientists hope to improve their understanding of what sustains life and so improve our chances of colonising space and even saving the earth from environmental disaster.

Science news site Sciencebase

X-rays Make Smoother Chocolate

Chocolate

For manufacturers of drugs and chocolate bars, an understanding of how they crystallise can mean the difference between a best-selling product and a flop. X-ray diffraction could help them get a clearer picture at the atomic level.

The taste and feel of chocolate in the mouth depends a lot on the crystal form of the cocoa solids, while some medicines work more effectively in one polymorphic form than another. Until now a crystal clear understanding at the atomic level of how different polymorphs form in everything from chocolate to medicine has been little more than trial and error except in the laboratory setting of the vacuum. Now, Elias Vlieg of the Department of Solid State Chemistry, at the University of Nijmegen, describes how X-ray diffraction (XRD) techniques can be used to study crystals as they form and so provide clues as to how their growth can be better controlled. The chance of tastier chocolate and more efficacious drugs is on the horizon.

If the growth of crystals were clear-cut, there would be no need to study crystal growth, but many compounds can crystallise in different – polymorphic – forms. Even a material as seemingly simple as carbon has several polymorphs – graphite, diamond and fullerite. The differences between polymorphs of the same compound can be tiny, an atom shifted slightly to the left, or a tighter angle between two bonds. But, they can also be quite large differences that impact on the overall properties of the solid. For a drug in solid form this can have a real impact on how well it is absorbed by the body. One polymorph may take longer to be dissolved and absorbed while another might be faster acting. The result can also alter the drug’s side-effects. A slowly absorbed drug might sit in the stomach too long and cause irritation of the lining of the stomach for instance.

On the lighter side, the minute crystals of cocoa solids in a chocolate bar affect how the bar melts in the mouth. One crystal form may have a more pleasing texture on the tongue than another. According to Vlieg, XRD has been wholly successful in observing crystal growth in a vacuum. But for crystal growth from the more industrially realistic setting of a solution, melt or solid, it has until recently been little more than a dream tool.

Now, XRD is beginning to offer information on the structure of both sides of a growing interface. This, explains Vlieg, means that structural details like relaxation and reconstruction on the crystal surface and ordering in the solution can be included in the theoretical description of crystal growth.

Understanding crystal growth in vacuum and beyond, Surface Science, in press.

Water, water

This article originally appeared in my Catalyst column in the original incarnation of ChemWeb.com back in the year 2000, it seems like ancient history now. However, the PI got in touch recently and was asking if there were an archived version of the article online. Sadly, there wasn’t other than his own site’s copy, so here’s my original for the record.

I always fancied the idea of polywater and what it might be able to do. But, then I also quite like the idea of using chemistry to convert lead into gold, a money tree and the magic porridge pot. While, polywater may have turned out to be a lost cause, chemists have for many years unearthed some quite bizarre properties from the liquid of life, writes David Bradley.


The discoveries about this elemental material continue to this day with a collaborative team from Japan and the US publishing results in Nature recently (30 November 2000) that show that water becomes a two-dimensional glass and shrinks under extreme pressure when cooled and confined.

To the ancients, water must have seemed such a simple yet marvellous material – primordial, straightforward, life-giving, ubiquitous and, to them, elemental. Indeed, until we began looking more closely at its physical properties and the underlying physical chemistry, the hydrogen bonds, polarity and such it remained that way.

Water is indeed a simple-seeming substance – a couple of hydrogen atoms stuck on an oxygen making a boomerang shape. Couldn’t really have been any more uncomplicated, really, straight perhaps? But, water is not, as any high school science student would hopefully be able to tell you. Up to a point it expands when it is cooled below 4 Celsius. It expands just enough to make the perfect Scotch on the rocks and to have left the Titanic in the same predicament.

Water is also rather unusual in that unlike most other materials it exists in all three standard states of matter – solid, liquid and gas – at temperatures that are not at all outside our everyday experience. The likes of carbon dioxide, common salt and egg white, just don’t have that ability to flip between states within a 100 degree range. Add to that the fact that it is far more viscous than other similarly sized molecules, it can readily be converted into that increasingly familiar supercritical fluid state for which chemists are finding green applications at every turn. The list goes on – unexpectedly high heat capacity, solubilising capacity, hydrating ability?

Microstructure of water

Much of water’s anomalous behaviour boils down to the formation of hydrogen bonds between those dangling hydrogens on the boomerang tips and the oxygens on neighbouring molecules and the tiny clusters of water molecules that exist fleetingly in the liquid state but lost in the gas and frozen in the solid.

In 1992, I reported on work from Sydney Benson and Eleanor Siebert of the University of Southern California at Los Angeles for New Scientist (see New Scientist archives). They used experimental data for ice and for pairs of water molecules in the gas phase to construct a theoretical model of liquid water. They claimed that the microstructure of water could help explain many of water’s unusual properties. Their model help them envisage transient cubes of water molecules held together briefly in groups of three or more – with their hydrogen bonds breaking and reforming some 500 billion times a second.

Where are the clues?

Later work provided further solid theoretical clues about water’s hidden properties. David Clary and John Gregory of the chemistry department at University College London used quantum Monte Carlo methods to simulate millions of possible random configurations of water molecules and came up with a hexamer that would be plausible under Schroedinger’s equation. While such theorising may ultimately lead to a way to predict the properties of water from first principles, since it is this molecular behaviour that gives rise to the bulk effects, water still holds plenty of surprises for those scientists who keenly take to it.

Xiao Cheng Zeng, Associate Professor of Chemistry at the University of Nebraska, Lincoln, working with Kenichiro Koga of Fukuoka University of Education and Hideki Tanaka of Okayama University in Japan have found that they can make water form a glass rather than ice crystals at -10 Celsius by confining it in a tiny slit just 1 nm across.

Three years ago, Zeng and Koga who was at the time a postdoctoral fellow at UNL, and `ice expert Tanaka’ were using computer modelling to look at the way water changes when it is put under extremes of pressure. The model showed that rather than expanding on freezing water it can contract if it is squeezed at 493 atmospheres at -40 Celsius between two hydrophobic plates held a nanometre apart. The model showed that water was freezing into ice crystals with a hexagonal structure where every water molecule is hydrogen bonded to its four nearest neighbours but rather than being in a three-dimensional lattice the crystals were planar. Zeng confesses that he figured Koga’s model was simply incorrect, they were looking for water glass, or ice glass, and had stumbled across a new two-dimensional crystalline form instead. “We ran many, many trials for about six months,” Zeng says, “but we found the water froze into crystals and shrank every time.”

Koga, Zeng and Tanaka were actually hoping to find a mixture of pentagons, hexagons and heptagons in the molecular structures of the water and thought it would be fairly easy to reproduce in the laboratory. But, it has taken three more years to come up with the real thing.

Frustration was the answer

The trick that finally did it was to introduce `frustration’ into the process. This simply involved holding the two hydrophobic plates immobile while the water was compressed and frozen. The effect was to totally inhibit the formation of a true crystal and force the water to form a glass instead. It worked.

Zeng says he has nicknamed the new form of ice `Nebraska’ ice from the Otoe word for `flat water’. But, aside from an interesting addition to the list of water’s bizarre behaviour is there likely to be any immediate applications? Zeng does not think so, his reward, he says, is the simple joy of discovery. “Water is such a fundamental substance that it deserves a lot of attention and we want to understand it from every aspect, from its nanoscale behaviour, from its molecular properties, and all the way up,” he explains.

Maybe what we have learned so far about water is just the tip of the iceberg. Now, pass me that Scotch, with a touch of water, of course.

Carpet Consumers

Trust a scientist to take consumer rights to the extreme. Analytical chemist Gerry Clark bought a new carpet for his son’s bedroom. The carpet had that common ‘new carpet’ smell but after several weeks it still hadn’t dissipated and Clark began to worry about the fumes to which his child was being exposed.

He took a chunk of the carpet into his lab and recorded a gas chromatograph (GC) for the volatile emissions. Sure enough, there were spikes due to several organic compounds. Clark took the test sample back to the shop together with his GC results, complained, and insisted the sample be sent to the manufacturer.

A week later, the company was in touch offering a replacement because the original carpet had obviously not been left to dry long enough before dispatch to the outlet. Needless to say everything smells rosy now.

Such tales are all very well for lab chemists, but what about the rest of us fobbed off with fusty floor coverings, smelly sofas, and pungent pouffes? Maybe consumers should set up an action group with its own labs to help people make a scientific case for complaints. It could be called the Prevention of Odourous New Gear Society. Or STENCH, STINK, REEK…or whatever.

Sperm tap

Richard Evans, Catrin Pritchard and their colleagues at GlaxoWellcome discovered a way of blocking the path of sperm from the testes, which could produce semen that is virtually sperm free without the need for an irreversible vasectomy.

On the other hand, as it were, the control they have discovered could also be used to enhance the movement of sperm from the testes and so may have potential in male fertility treatment too.

I often wonder with these fertility researcher people whether they do their research manually…maybe not. For more on male fertility research check out the sperm tap article over on Reactive Reports.